| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1158 |
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| Symbol | thiE |
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| ID | 8709453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1344672 |
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| End bp | 1346249 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646483248 |
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| Product | thiamine-phosphate diphosphorylase |
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| Protein accession | YP_003374356 |
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| Protein GI | 283783602 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2145] Hydroxyethylthiazole kinase, sugar kinase family |
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| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase
[TIGR00694] hydroxyethylthiazole kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00817075 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAACAT GCAACACTGA AAAAACAACT AACTGCAACG AAGCAAACGA ATACTGCACA
AGCTCAACAA CGCAAGTCGA CACATGCTTC TCTGTACGCG CACGCCGCCG CATGTTTCTT
AACGACGTGC GTCAATGCAT CGAACGCGTG CGCACACAGC AGCCACTCAC CCATTGCATC
ACGAACGTAA TCGTGCAAGA CATTACAGCC AACGCACTAC TCGCTGCAGG AGCGTCGCCG
ATTATGGTAA CCGACCCAGA AGAAGCGCAT GCACTTGCGC AAATTGCCAC AGGCGTGCTC
ATAAACGTTG GCACATTCCA TCAGCCAGAA ACTTCCGAAT ACATGCGCGC AGCTGTTGAA
GGATGCGAAA AAGCCGATAC TCCGTGGGTG CTTGACCCGG TTGGAATCGG CGTTCCAGCA
CTTGCTCCAC GCGCGCGCTT TATACACGAA ATTATTAAGC ATCACCCTAC CGTAATTCGC
GCAAATGCTT CCGAAATAAT GGCACTTGCA GGCAAAGAAA GCAACGGCAA AGGTGTGGAT
TCTCACGATA ACGTGAACGA TGCTCTTCAA GCCGCGCGCG AATTAGCAAA AAAGTACGGC
TCAGTAGTGG CAATTTCTGG CGAAAAAGAC GCGATTTACG CTCACGGTTG CTTAGCTCGC
GTAACCGGCG GACATAAAAC TATGACTAAG GTAGTTGGAA CCGGTTGCGC TTTGGGAGCG
TTGGTTGCAG CATACGTTGG CGCAAACCCG GAACGTCCGC TCGCAGCAAC TGTTGCAGCA
CACGTGCACG CAGCAGCGGC TGGAACTTGG GCAGCTCGCC AAACCACAGC TCCCGGCACT
TTTCGCACAC TGTGGATGGA TGCGCTTTCA ACTCTTAGTG TAAACGACAT GTTTAGTTTG
ACAAATATTG AGTTTACGGT GGAACCTGTT GATTGGACAC TGTATTTGGT AACGGATCCG
CGCATGGGAA ATCGCCCGGA AGAAGAAGTT GCAGTAGAGT CAGTTGAAGG CGGAGTTACA
GTTGTGCAAT TGCGCGATAA GTATTCCGAC GACGCTGAAA TTTCAGCAAA GGCGAAGAAG
TTGCGTCATG CGCTTATTGA TTCCGGCCAT GGCGACGTGC CTGTGTTCAT AGACGATCAT
GTTGATTGCG CAGCTCAGCT TGGTTTCAAC TTGCACGTTG GGCAAAAGGA TACGCCGTTT
GTTGAGGCGC GAAAAGCGAT GCCGGCAGAG TGGATGGTTG GGCTTTCTTG CGCGCGCCCG
GATTTGATGG AGAAAGCTTA CCGCGAATGC AAAGAAAATG ACGTTCCGCT GCCAGATGTA
ATTGGCATTG GTGCCGCTTT TGAAACGCAT ACAAAAGCGC ACGACGTGCC GCCGCTGGGA
GTTGACGGAG TGAACGAAGT GGCGAAAGTT GCGCACTCTA TGGGCGTAAA AACGTTAGCA
ATTGGCGGAA TTCACGAGAA CACAGTGTTC CCTATTCGAG GTCTTGAACT TGACGGAGTT
TGCACAGTGT CGGCGCTTAT GTGCGCTGAG GATGCTGGGA AAGTAGCGCG CGAGCTTAAA
AGCGTGATTA CTGAGTAA
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| Protein sequence | MTTCNTEKTT NCNEANEYCT SSTTQVDTCF SVRARRRMFL NDVRQCIERV RTQQPLTHCI
TNVIVQDITA NALLAAGASP IMVTDPEEAH ALAQIATGVL INVGTFHQPE TSEYMRAAVE
GCEKADTPWV LDPVGIGVPA LAPRARFIHE IIKHHPTVIR ANASEIMALA GKESNGKGVD
SHDNVNDALQ AARELAKKYG SVVAISGEKD AIYAHGCLAR VTGGHKTMTK VVGTGCALGA
LVAAYVGANP ERPLAATVAA HVHAAAAGTW AARQTTAPGT FRTLWMDALS TLSVNDMFSL
TNIEFTVEPV DWTLYLVTDP RMGNRPEEEV AVESVEGGVT VVQLRDKYSD DAEISAKAKK
LRHALIDSGH GDVPVFIDDH VDCAAQLGFN LHVGQKDTPF VEARKAMPAE WMVGLSCARP
DLMEKAYREC KENDVPLPDV IGIGAAFETH TKAHDVPPLG VDGVNEVAKV AHSMGVKTLA
IGGIHENTVF PIRGLELDGV CTVSALMCAE DAGKVARELK SVITE
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