| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1154 |
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| Symbol | |
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| ID | 8708778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1338849 |
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| End bp | 1343435 |
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| Gene Length | 4587 bp |
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| Protein Length | 1528 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483245 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374353 |
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| Protein GI | 283783599 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.193707 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGG ATACTGCATT ACAAGCATTA TTTGACGGTA CGTTACGCAA TTCTTCTGGC
AATGTGACTA ATGCGTTGCT TGTGTATGGT GCGCCGAATA CTGGTAAAAC GCAGTTTGCT
GTGCGCGCAG CAATTTCCGG CTATAAGCGT TGGTCGCATA ATGTTACTGC AATGGCTGTG
CAAAATCGTG TTCTTGCTTC AAAAATTGAC AATATTATTA TTCGCCAAAT TGGTGTAAGT
AAGCAGTCTC GTCCAGTTGG CACTTTGGCT TCTTTGGCTT TTACTATCAT TTCTGCTTGC
TGTAAGTTAA AGAATAATCC TTCGCCTAAG CTGCTAAATG GTGCTGAGCA GGATTCTTTG
CTTCGTAAAG TTTTGCGCGC ACACATTGAG CATGTTATGC GTGGAGATAA TGGTGATTGC
AATATATGCG CGCTTTTTAA GGATTATTTT GAAACGTCTC AATGGGTTGT TCCATTAACT
TGCGCAGTTT CCGCCGCTTC AGTGCCTTCT GCGCCTTCCG CGACTCCGGT TGCTCAATCA
ACTTCTTCTT CTCCAGAATT TTTGGCAGAT AGATTCGATA TTAACAACGC TTTTATGCAT
CAATTGCGCG ATATGCTCGC TCGTTTAGAT GAGCTTGGTA TTAGCGATTT TGAAAGCGAA
AATTCAGTTC TTCGCGCTCT TAGTGACGAG CAATCTTACG CCAATAATAG TGATATTTTA
CAAACGTCTG TGCTTATTAA ACGTAGATTA ACTCAATGGC GTTTGGCGTT TGCTTTGCGT
GCTGAATATC GAAAAATAAT TGCCGACACT TATAAGTCTT CTTTCCGACT TGACGCTTCG
CAACTGTTGG TTGAGGGTGC AAAATCTGCG CGCGAATTAG GAGAGCATGG TTTAGTAAAT
TCTTCTGAAA TTCCAGCTCT TCTTGTAGTC GATGATTATC AAGATATTAC TTTGGCTGGT
TTGAGTTTTA TTGAGACTTT GTCGAAGATT GGCACGCGTT TAGTTTTGCT TGCGAATCCG
GATGAATCTG TGCAATCGTT TAGAGGAGCG TACCCGGATT ATGCAATTTC TGCAGCTTTG
GATGAGTTGA ATGCTGCTGA GCAAACTTTA GAATATACGG GTCTTGCTGA TTCTTGCGAA
AATTCTTCCG ACGATTCTGC CGATTCTTCT AAAAATTATT CTGCAGATCC AACTTTTGCA
AATTATACCC AAGCACCTTC GATGCGTGAA TTGCTCGCTT CACGCGTTTC TCTTTCGCTT
ACTTCGCAAT ATAAAACAGA TGTTGCGCTC CCAAATCGCC CTTGGAAAAT GCCAAAATTT
GTAGGCTCCT TACCGATTGA GCCTATAGAA ACCCTCCAAA ATTCTCATCT CAACTCAGAC
GACACTGTTT TTACAGCGTT ATATCGTTCA CAGCGCGAGG AATTAGATGC TGTTATTTGG
CAAATGAAGC AATCTCACGT AAATAATAAG CGCAAGTGGA GCGATATGGC GTTAATTGCG
CACGACAATT CTACTGTTCG TCTTTTTGGC GAGCAGCTTC GCGCTTCTGG GGTTCCTGTG
CGATACTCGT CAGTGACTCG CCCATTAAAA GATGAGCCGT TTGTGCAAGG TTTATTTGCG
CTTATTGAAC TTGCTCAATT TGCGCAGCAC GGTTTTTCTG GAATTGTTGA GCAAGTAAAA
CATGGTAGAA GTTTGCAAAA TTTGGCTTCG TGGGTGCGTT TGCGAGTTCA GAATATTATG
GATAGTCCGC TTTCCGCGAT TACTAAAAGT GATTCTGGAT TTTACGGTGA TTTAGACGTT
GAAATACCTG CGAAGTTATA TTCTGTAGAT TTGCTTATGC GTTCTCTTTC TTCTCTTTCG
GCTGTTTTAA TTGAGCAAAA TGGTGAAAAG AACAAGAACT TTGAATCTAA TGCTCCTTTG
CGAAATCTTG TTCATAACTG GGATTTGTTG CAAAATTCGC TTCATGATGC GCAAAGCAAG
GCGTACGTTG AATCTCAAAT TTTGGTTGAT AATAGTCGTA TTGATGGCAG TTCAAATGAT
CTTATGCCAT TATCTCTCGA TGCGTGCTAT TTGCTTTGTG TAGCAGATGT TGCACGTTCT
ATAGATGATG ATTCTACAGT GTTGCAAATA TTGCAGAATA TGGCTCCTCG AAATCCGCAC
GTTGCAGCTT TTGTAAAACT GTGGAAAAAC GTGCAAATTC TCGCTTCTCG TATGCGCAAT
AATCCTGATT TGAGTAATGC TCAATACGCT CTTGGTGAGG CTTGGAATAT TTGTCATGTT
GCTGAGCGTT GGCAGCGTAT GTCTTTACAG CATAATTCGG AAGGTTATCG AGCCAACGAT
CGCTTGGATG CTGCAATGCG TCTTTTTGAT TATGTTTCTT CATATGTTTC TTCTGATATT
TCTTCAATGA ATACGTTTGA CGATACTTTT AGACAAGAAA ATGTTGTAAG TATTGCAGAT
TTTATAGCTC AAGTTCGTGG CATGGAAATT GAAGCTGATT CTCTTGCTAA AGTAGCACCT
GTTCCAGATG CTGTAACGCT TACTACTCCT GCTGGTTCTG TTGGAAAACA TTGGAATCTT
GTGTGGATGC CTACTTTGCA ACAACGTGTG TGGCCAAATC TTGCTTCTCG TAGCACTATG
TTTGGCGCAG AAAGTTTAGC GAATATTATT TTGCATTCTA AGATTTCTGC TTCTAAATTG
ACTGTGAATG CGTCACTTCT TTCGAATAAT GATAAATCTG CAGTTTTTGC TTCGGAACAG
CGCAGTTTTT TGTTAGCTAT TACGCGCGCA ACAGAGCGTT TGTATATAAG CGCGCAATAT
AGCGATAGTG CTGTGCCAAG CGACTTTCTT TATTATTATT TGCCTGAAAG ATACTACAAT
AATGAAAATT CGCGCACGCC TTTTACGGAA TTTACTACAC CTTTTGCCGG TTTAGATATG
GATGCTCGTG GACTAGTGTG TGCTGCTCGT TCGCAAATTT TGCGTGCTTC TTCTATGAAA
GAAGAGTTTG GAAATAGTGT AGGTAATGCA GATAGTGCAG ATAGTGCAAG TAGTTCCGAT
ATTGCAAATA GTTCCAATAG TGAGAATAGT AAGTCTAGAA ATGCGATTAT TGACGCTGCT
CAAACGTTGC AATTACTTAA AGAAAATGGA ATATTTTGCG CTGATCCTTT TGAGTGGGAT
TTTATGAGCG ATGTCGATGA CTATGTTGAT AAAAAATCTT CTGTTGAAAA AGACAATGAA
AAAAACAATG AAAAAGCTGG CTCTGCTAAA AAAGCTAGTT CTGTTGTAAG CTTGTCTCCT
TCAGCTGTAG ATAGTTTGTG GGCATGCCCT GTGTGCGGAT TGCTAAATCG TCAGCTTTTA
GGTCCTCAAC CCGGCAGTGC AGCAACGTAT TTTGGCACGC TCATTCACGA AACTGCAAGA
TGGGCAAGCG AAAATCAGCA TTACGATATG CCAGAAACTG AAGTTGATGA AACTGAAACA
GCGAATAATT CAGCCGACTA TTCTCCCTAC TCTCCGCTTG TGCGCCGCAG TAACGCAATC
GCAAATCTTA TGGAAAAGTA TTACCTAAGT ATTGCGCCTG AACTTGCAGA TATTCGAGAT
AGTAAGGAGC ATTATTCGGC TCTTGCGCGT GAGAAGAATA TTAAACGTGC GTTACATGCA
ATTGCGCAAT ATTTTGTCAC TTCTTACGAT CAATCAACAT ATGCGCTTAA CTCAAAAAAG
TCAGAAAACG GCATATTAGA ATCTCTTACA AAAAGCGAAA AATCTTTAGA AAGTAGCATA
GGTAGATTGC AACAAGCGTA TTGCGAATTG CAAACAAGCG CGCATTTTGG ATTTAATGAT
ATTGCTCGCG TATTGAACAA TACTTTTAAG AATGCAAATT TGCAAACCGT TACTACGCAT
GATTGCTACG AATTGATGGG TGCTTTAGTT GGAGGATGGC CGGATGGCGC AAGTGAAGAT
ATGCAAGTAC ATATTCACGG TCGAATTGAT CGCATGGAAA AGCGCATTAA TTCAGATGGT
TCCGAGCATA TTCGCTTACT GGACTATAAA ACAGGAAAGC CTTTAACAGC AAGCGGAGTT
TTTAACGATT TGCAGCTAGT TTGCTACCAG CTTGCTTTAC TTTTTTCTGA TGAGAAACCT
CTTATTGATG CGTCGAATGC GCCGATTATT TCGCGAAGTA TTCTATTTCA CGTTGCTAAG
AACGATTATC CTGCTCAAGA TCATAACGTT GCTGAAAACG TGTATCAGCC GCCGCTTTGC
GTAAAAAATG CTTTAAATAA TAATCCGCTT GAGTTACGAG TTGGATTCAA AAATATGGCA
AGATTGTTAG ATTGTCCGCA TCTTGACGAT ATTGCGAAGA ATTGTCCAGA AAATGTAAGC
GAAAGCGCTT GGCAGTCGTT TACATCATTA AACCAAAGTG CAAAATGGTC TCTTACTATG
ATTTCGCGCG TTTGCTATGC TGCTGCGGCA GTTCGTTCGC ATAAGATTAT TGCGCACCCA
ACTTCTGAAC ACTTAAAGTA TTGCAACGGA AAACAAGTAT GCCCAGCATG CGCAGGTTGT
ATAGACACTG TATATGAGGT GTTGTAG
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| Protein sequence | MSEDTALQAL FDGTLRNSSG NVTNALLVYG APNTGKTQFA VRAAISGYKR WSHNVTAMAV
QNRVLASKID NIIIRQIGVS KQSRPVGTLA SLAFTIISAC CKLKNNPSPK LLNGAEQDSL
LRKVLRAHIE HVMRGDNGDC NICALFKDYF ETSQWVVPLT CAVSAASVPS APSATPVAQS
TSSSPEFLAD RFDINNAFMH QLRDMLARLD ELGISDFESE NSVLRALSDE QSYANNSDIL
QTSVLIKRRL TQWRLAFALR AEYRKIIADT YKSSFRLDAS QLLVEGAKSA RELGEHGLVN
SSEIPALLVV DDYQDITLAG LSFIETLSKI GTRLVLLANP DESVQSFRGA YPDYAISAAL
DELNAAEQTL EYTGLADSCE NSSDDSADSS KNYSADPTFA NYTQAPSMRE LLASRVSLSL
TSQYKTDVAL PNRPWKMPKF VGSLPIEPIE TLQNSHLNSD DTVFTALYRS QREELDAVIW
QMKQSHVNNK RKWSDMALIA HDNSTVRLFG EQLRASGVPV RYSSVTRPLK DEPFVQGLFA
LIELAQFAQH GFSGIVEQVK HGRSLQNLAS WVRLRVQNIM DSPLSAITKS DSGFYGDLDV
EIPAKLYSVD LLMRSLSSLS AVLIEQNGEK NKNFESNAPL RNLVHNWDLL QNSLHDAQSK
AYVESQILVD NSRIDGSSND LMPLSLDACY LLCVADVARS IDDDSTVLQI LQNMAPRNPH
VAAFVKLWKN VQILASRMRN NPDLSNAQYA LGEAWNICHV AERWQRMSLQ HNSEGYRAND
RLDAAMRLFD YVSSYVSSDI SSMNTFDDTF RQENVVSIAD FIAQVRGMEI EADSLAKVAP
VPDAVTLTTP AGSVGKHWNL VWMPTLQQRV WPNLASRSTM FGAESLANII LHSKISASKL
TVNASLLSNN DKSAVFASEQ RSFLLAITRA TERLYISAQY SDSAVPSDFL YYYLPERYYN
NENSRTPFTE FTTPFAGLDM DARGLVCAAR SQILRASSMK EEFGNSVGNA DSADSASSSD
IANSSNSENS KSRNAIIDAA QTLQLLKENG IFCADPFEWD FMSDVDDYVD KKSSVEKDNE
KNNEKAGSAK KASSVVSLSP SAVDSLWACP VCGLLNRQLL GPQPGSAATY FGTLIHETAR
WASENQHYDM PETEVDETET ANNSADYSPY SPLVRRSNAI ANLMEKYYLS IAPELADIRD
SKEHYSALAR EKNIKRALHA IAQYFVTSYD QSTYALNSKK SENGILESLT KSEKSLESSI
GRLQQAYCEL QTSAHFGFND IARVLNNTFK NANLQTVTTH DCYELMGALV GGWPDGASED
MQVHIHGRID RMEKRINSDG SEHIRLLDYK TGKPLTASGV FNDLQLVCYQ LALLFSDEKP
LIDASNAPII SRSILFHVAK NDYPAQDHNV AENVYQPPLC VKNALNNNPL ELRVGFKNMA
RLLDCPHLDD IAKNCPENVS ESAWQSFTSL NQSAKWSLTM ISRVCYAAAA VRSHKIIAHP
TSEHLKYCNG KQVCPACAGC IDTVYEVL
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