| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1147 |
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| Symbol | def_2 |
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| ID | 8708976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1324850 |
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| End bp | 1325503 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646483238 |
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| Product | peptide deformylase |
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| Protein accession | YP_003374346 |
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| Protein GI | 283783592 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTACGC ATCACGCAAG TGTTGATACT AAGCTCAGTC GCGCTGTTGA GCGCTTGCTT
GATTCCGCTA CAGAAGACGG CATTTTGCCG ATTGTGCAAG CAGGTGAGCC TGTTCTTCGC
CAGCGCACTG TGGCATATGA TGGCCAGCTT ACACGTGCTA CACTCACAAA ACTTATTTCT
CTTATGCACA GCACAATGCT GGAGGCTCCA GGCGTAGGTT TGGCTGCTCC ACAGATTGGT
TTAGGTCTTG CGATTGCCGT TATTGAAGAT CATGTTCGTG ACGATGAAGA CGATCCTCGA
GACATTGCAG AGCTTCCGTT TAGAGCGATT ATTAACCCGC ATTATGAGCC TATTGGTACG
CAAACTCGCA GTTTTTACGA AGGCTGCTTA AGTGTTTCCG GCTACCAGGC TGTTCGTCAG
CGTTGGCTTG ACGTTCAGGC AACTTGGCAA GATGAGGACG GCAAACAACA TTCCGAGCGT
TTGCACGGTT GGCCTGCGCG TATTTTCCAG CACGAAACTG ATCATCTTCG CGGCGAACTT
TATATTGATC GTGCGGAAAT GCGTTCGCTT TCTACCGACG AAAATCTTGA AGATTATTGG
GCAGATGAAG CAGTTCCAGT AGCTGCAGCT CGCACTCTCG GTTTTGCAAT ATGA
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| Protein sequence | MFTHHASVDT KLSRAVERLL DSATEDGILP IVQAGEPVLR QRTVAYDGQL TRATLTKLIS
LMHSTMLEAP GVGLAAPQIG LGLAIAVIED HVRDDEDDPR DIAELPFRAI INPHYEPIGT
QTRSFYEGCL SVSGYQAVRQ RWLDVQATWQ DEDGKQHSER LHGWPARIFQ HETDHLRGEL
YIDRAEMRSL STDENLEDYW ADEAVPVAAA RTLGFAI
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