| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1143 |
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| Symbol | |
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| ID | 8710008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1320879 |
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| End bp | 1322249 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483234 |
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| Product | efflux ABC transporter, permease protein |
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| Protein accession | YP_003374342 |
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| Protein GI | 283783588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTTA TCTCTCGTGC AATACGCTAC ATTCTGAGGA AACGAATAAA AACAGCGATA
GTTTTCATTA TTGTATTTCT TATTTCGACA TTGTTATTTT CTACTTCTGC AGTTTCAAGT
GCTGCAGGTA GAGAAGGAGA AAAAGTTGAA GCGCAAGCAG AGTCTAGTTT TGTGCTCGCA
AATAACCCTC AAATAAACCC TGGAACTCCT AGAGGAGCTG GAACTGTAAA ACCTAAAGAT
GTACAGGCAA TTGCAAAATT AAATGGAATT GCTTCCTACG TTGTTCGACA AAATGTAACA
GCGGATTTAG TTAATGCTAA AGCGGCAAGA ATTCCAGGCG TTCAGGATTA TGATCAAAAG
CGCGAGCAGC AGTTTGGAAA TGCCGTTAAT ATTGAAGGGA CGAATGACTC TACTGGTTTA
AATACTTTTA AAACAAAAGC AATAACTATG TCTAAAGGCA AGCATCTTAT TGCTAATAAC
GTTCATGCAT CACTGATTCA TGAAGATCTC GCTAAAGCTA ACGGATTACA TGTAGGAGAT
ACTCTTACGC TTCGCGCTAA TCCTTACGAT GCTGACAATA TTCAACAATC AACAGCAACA
GTAAAAACTC GTATTGTTGG AATTTATGCC GGAGCAAATA AGCGTCAAGT CGCAACTAGG
GCGGAATTGA CAGCTAATAC CGTGTATACG GATTTGCAAA CTACTCGCGA ATTATACAAA
TATGAGCCTG GAAAAGAAAT ATATCAGGAT GCAAGTTTTA GAATAAAGCG CGGTGAGGAT
GCGGATAATA TTATGGCGCA AGCTGCCAAA TTGCCTATTG ATTTGCAAAA CTATCAACTA
ACTCGTGACG ATCAGTTCGT TTCTGGTTTG TTGAAAGCAG CAAAGGGAGT GCGCTCAATA
ATGACTGTTA CAACAATTGC TGTTGTATCA TTTGCTATTA TTGCTTTGGC ATTAGTGCTT
TTGCTGTGGA TGAATGAGCG ACGTAATGAA ATTGGTGTGT TTGTTGCAAT TGGCACTGGC
AAATTATCTA TAGTTGGTCA ATATCTTGCT GAGATTGTGC TTATTGCAAT ACCTTCGTTG
ATTGTGGGTT ACCTTTTTGC AAAAGTTATA GCTCCGTTGA TGGCTAATGT TGCTCTTGGC
TCTGTGCAAT CATCAGCCGC TCGTGAATTG AGTAATATGG GTCAAGCTGG TGGAAATCTT
GAATCAACTT TGGCAACAAA AACTTTGGAA ACACTTAGCG TACAAGTAGA CGCTCAGTGT
TTTATCGGAG TTTCTACAAT TGTTGGTGCA GTAATCGTTA TTGCAGTTGT GTTGTCTTAT
TTGCCAGTTA TATGCAAATC TCCTCGTGAG CTCCTCGGAT TGCAAAAGTA G
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| Protein sequence | MTFISRAIRY ILRKRIKTAI VFIIVFLIST LLFSTSAVSS AAGREGEKVE AQAESSFVLA
NNPQINPGTP RGAGTVKPKD VQAIAKLNGI ASYVVRQNVT ADLVNAKAAR IPGVQDYDQK
REQQFGNAVN IEGTNDSTGL NTFKTKAITM SKGKHLIANN VHASLIHEDL AKANGLHVGD
TLTLRANPYD ADNIQQSTAT VKTRIVGIYA GANKRQVATR AELTANTVYT DLQTTRELYK
YEPGKEIYQD ASFRIKRGED ADNIMAQAAK LPIDLQNYQL TRDDQFVSGL LKAAKGVRSI
MTVTTIAVVS FAIIALALVL LLWMNERRNE IGVFVAIGTG KLSIVGQYLA EIVLIAIPSL
IVGYLFAKVI APLMANVALG SVQSSAAREL SNMGQAGGNL ESTLATKTLE TLSVQVDAQC
FIGVSTIVGA VIVIAVVLSY LPVICKSPRE LLGLQK
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