| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1142 |
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| Symbol | |
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| ID | 8709233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1319485 |
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| End bp | 1320804 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483233 |
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| Product | efflux ABC transporter, permease protein |
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| Protein accession | YP_003374341 |
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| Protein GI | 283783587 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGTG AAGTAATTTC TTTATGTGCT CGAGCGAAAC TTGCAATATT GCGCAAACCT
CGACGTAACG CAATAATTGT GCTGATTATG ACTCTTGTTT TAAGTGCGCT AGTTTCACAA
GCTGGTATCA GTGCTTCTGT TGAGGGTGCT AGGGATCGTA TTCAATCCAG TATTGGTTTA
GGTTTTACTG TACGAGCAAA AACTCGAGGT GAAACTCTTC CAGAGCAAAG TAATACAAAT
TCTAATTCTG TTGCTACGTC TAATTCTCCA ATTCCACAAG ATTTGGGCGC GAATGAAGGA
ATTGACTCTA GTCAAATTCG TAAATTTGCT GCGATTTCGG GCGTAAAAAC TGTAGTGGAA
GAGCGCGATG TTTTAGCTGT GCCTGTTGGA AAGCAACTTG TGCTTCCTGC GCAGGGTCCA
AGACTAGACG ATGATGTTTT GGCTCATGCT GCTGGAATTA CTGGCATAAC AGATTCTCGA
TTGTCTCAGG GTTTTCAAGA GGGATTATAC CGTTTAGAGC AGGGTGAGCA TATTACTAAT
CGTTCTTCTG GTAGAGCAAT AGTGCATCGT GATTTTGCTA AGAAGAATAA TCTTAAGATT
GGTTCTACTA TAATTCTTAA GCAGGGGTTT AATGTAAAAG TTCGTGTTGT TGGCATTTTT
GCCGGCAAAT TGCAAACTAA AGGAGCACTT CCTTCGGATA CTTCAGAAAA TCGCATATTT
ACTGACTTAA GTTCGGCGTT GTCTTTGGCT GGCTCTTCTA AGCGAGGTGT TTTGCGCTGT
GTTGTCGAGC GTTCTGATTT ATTAGCTAAT GCAATACGGC AGGCTAAAAC TATTGCCGGA
AAGTGGGCGG ATGTAGAGCA GAATGCTTCG CAATTGTCTG ATGTAATAAG CTCGGTTAAC
TCTGTGCAAC AACTTGTGCG AATGATTTTT GTGGCACTAA GTTTTGTTGG TATTTTAGTG
CTTGGACTTG TATTAGTGTT CTGGGTTAGA GGACGTATGC ACGAGATTGG CGTACTTATG
TCTATTGGAT TATCTAGAGC AATAATAGTT AGTCAATTGC TTGTTGAAAT AGCGATACTT
AACATTGTGT CATTCGTCAT TTCGCTAGGC TTCGGTGCTG CTTTTTCTGG CGTTATTGGG
TCTGCGATTT TGCATAGTGC TGATTCGTCA TTTATTGCGG ATGGTATGCC AGTATTGCCA
TTGTTGCAAA CTCTTGCTGC TTTTGTTATT GGTTTGCTTA TTTCAATAGT CGCATTACTT
GTTGCAGTGC TGCCAATATT AATAAAGAAG CCTCGGCAAA TACTAAGTGC TATGAGTTAG
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| Protein sequence | MNGEVISLCA RAKLAILRKP RRNAIIVLIM TLVLSALVSQ AGISASVEGA RDRIQSSIGL
GFTVRAKTRG ETLPEQSNTN SNSVATSNSP IPQDLGANEG IDSSQIRKFA AISGVKTVVE
ERDVLAVPVG KQLVLPAQGP RLDDDVLAHA AGITGITDSR LSQGFQEGLY RLEQGEHITN
RSSGRAIVHR DFAKKNNLKI GSTIILKQGF NVKVRVVGIF AGKLQTKGAL PSDTSENRIF
TDLSSALSLA GSSKRGVLRC VVERSDLLAN AIRQAKTIAG KWADVEQNAS QLSDVISSVN
SVQQLVRMIF VALSFVGILV LGLVLVFWVR GRMHEIGVLM SIGLSRAIIV SQLLVEIAIL
NIVSFVISLG FGAAFSGVIG SAILHSADSS FIADGMPVLP LLQTLAAFVI GLLISIVALL
VAVLPILIKK PRQILSAMS
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