| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1139 |
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| Symbol | |
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| ID | 8708975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1315353 |
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| End bp | 1316933 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483230 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374338 |
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| Protein GI | 283783584 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0628] Predicted permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTACC AAGAGCAAGA AATGCATGAA TATAAGATGC ATGAGCATAT TAAGGAAAGT
GAAAATAAGC TAGATTTAGC TTCACTTTTC CCAGCTAAAG GCGATGACAG AAGGCCGCCA
GATTGGCTAG GTCGTGCACT TATTTACGTT GCAATTATTA CTTTTGTGTC TATCTTCCTA
TGGTTCGCTT GGAATAGCAT TTCATTCATT GTTTTCGATG TTGTGATTTC TATTTTTATT
GCGCTCGCAA TGGAACCGCT TGTTGTTCGG TTAATTAAGC ATGGTTGGAG GCGAGGAGTT
GCTTCTGGCT TTACGCTAAC GGGCTTGCTT GTTGTAATTA GCTTGCTACT TGCTTTGTTT
GGTAATTTAT TTGCTCAGCA GGTTGTTTCA ATGGTTATGG GCTTGCCTGA TTTATACAAT
CAATTTGCAA ATTTTGTGCT TCACTATACC GGTTTTAAAA TGCCTAATAT TGAGCAGCTT
GGCATGGAAA TTTTGAAGCA TGTGCAAACA TCTTGGGTTG TTGATTTTGC TGGCCAAGCA
CTTAACACAA CATGGGGATT GATGACTGTT CTGCTTGATT TACTTACCAT TATTATGGTT
ACGTATTACA TTTCTGCAGC AGGTCCGGCT ATGCGTCGTA GCATGTGCCG TTGGATGAAT
CCGCAATCTC AGCGTCGTTT CCTATTTATT TGGTCAGTTG TTCAAGAGCA GATTTCGAGC
TTCTTATTTT CGCGAATTAT TTTGGCAGCG ATTAACGCAG TGGGTACCGC AATTTTTCTT
ATTGTAATGA ATATACCGTA TTGGCTTCCG CTATCCTTAT TCTGCGGAAT TGTTTCGCAG
TTTGTGCCTA CAATTGGTGG CTATTTGGGT GGAGCTTTGC CTATCTTGGT TGCATGGGGT
TCCAATGGTT TTGGTGCGGC TGTTGCAACA TTAATTTTTA TTACGATTTA TCAGCAAATT
GAGAACATGG TTATTTCGCC GAAGATTTCC GAGAAGACTA TGGATCTGAA TCCTGCAGTA
GCTTTTATTT CAGTTCTTGT AATGGGCGCT GTATTTGGTG CTCTTGGAGC ATTTTTGGCT
TTGCCTGTGA CTGCAAGTTT GCAAGCAATT TTTAGAGTAT GCACGAAGCA ATATAGTTTA
GTTTCTTCTC CGCTTATGAA CGATCCTCAC CCTGATCATA CTTCTATTAT TGTTCGTTGC
GTTGAAGCGA TTGGCCGTAA GTTCATGAAT CCAATGAGTG AAAGTGTTCA TCGTGTAATG
AAAGGCACAA GCTCTCGCAT TTCTCTGAAC GAGGATATCC TATATTGGTA TAAGCAAGCT
TATGTGTCAG ACTCTGACGA TGCGAATGGT AGCAAAGTTT CTTCTATCGA TTCTGATCAA
ACTGACGTAT TGGCAACAAT GCCAATTTCG CGCGAAATAT TAGATGCCGT AAATAAAGAT
ATTGCAAAGC GTAAAGTAGA TTCTGAAAAT AAGGATTCTT CTAAAGCAAA ATTGCAAGTA
GGCGAGTCTA AAATAGTAAA AAATACAAAA AATAATAAAA GTAACGTAAA AAATAATCCA
CGGAGCGGAT GGAAGCGATG A
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| Protein sequence | MNYQEQEMHE YKMHEHIKES ENKLDLASLF PAKGDDRRPP DWLGRALIYV AIITFVSIFL
WFAWNSISFI VFDVVISIFI ALAMEPLVVR LIKHGWRRGV ASGFTLTGLL VVISLLLALF
GNLFAQQVVS MVMGLPDLYN QFANFVLHYT GFKMPNIEQL GMEILKHVQT SWVVDFAGQA
LNTTWGLMTV LLDLLTIIMV TYYISAAGPA MRRSMCRWMN PQSQRRFLFI WSVVQEQISS
FLFSRIILAA INAVGTAIFL IVMNIPYWLP LSLFCGIVSQ FVPTIGGYLG GALPILVAWG
SNGFGAAVAT LIFITIYQQI ENMVISPKIS EKTMDLNPAV AFISVLVMGA VFGALGAFLA
LPVTASLQAI FRVCTKQYSL VSSPLMNDPH PDHTSIIVRC VEAIGRKFMN PMSESVHRVM
KGTSSRISLN EDILYWYKQA YVSDSDDANG SKVSSIDSDQ TDVLATMPIS REILDAVNKD
IAKRKVDSEN KDSSKAKLQV GESKIVKNTK NNKSNVKNNP RSGWKR
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