| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1132 |
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| Symbol | hflB |
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| ID | 8709955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1304937 |
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| End bp | 1307246 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483223 |
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| Product | ATP-dependent metallopeptidase HflB |
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| Protein accession | YP_003374331 |
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| Protein GI | 283783577 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCTT CTCCTATGAC ACCGCAAGGC CCAATGGGCG GTCCTGGGCG TGGAAATAAC
GGGAATAATC CGTTTTTAAA TCCACGCAAC CCTAGGAATC AGCGAAACAA CGGTCAACAG
GGCAAGAATA ATAAAAATAA CGAGAACAAC CATAACAATC GTCGTTCCTT CTGGCAGTCG
CCATGGACGT GGATTGTGCT TCTTGTGTTG CTTTCAGTTG TCGGATTCCA AATGTTTGTT
CATAACGGAT CGCAAACTAT CGATACTCAG GATGGTATTG AGTTAGTGCG ATCTCATAAA
GCAAGTTATG TGGAAATTAT TGACAATAAA CAGTTAGTTA AGCTTACGCT TGATAGTCCG
TTTAAGAAGT TCGATAAACG AAGTAAGCAA AAGCGTGACT TTGGCAAGGA TGTGCAATTC
TACTACGCGT ATGCACAAGG TAGGTCAATT GTACAAGAAG TCGAAAAGGC GAAGCCTTCT
AACGGCTGGA CTGCTAGCTT ACAGTCATCT AGCATTATTT CGTATTTGAT TACTTCGCTT
GCTCCGATAT TGTTCTTCCT TGGCATGATT TGGTTCATGT TTAGCAGAAT AGGCGGTGCC
GGTGGAAGTA TGCTTGGCAT GGGTGGCGGA CGTGGCCGTG GCAAGCTGCT TGAAGGTCAG
ACTCCTAAAA CTAAGTTTGC TGACGTTGCT GGCGAACAAG CTGCTGTTGA AGAAGTTGAA
GAGATTAAAG ACTTCTTGAA GGATCCTTCG CGCTACAAGG CTTTGGGTGC TCGCATTCCG
CGCGGTGTGC TGCTTTATGG TCCTCCAGGA ACTGGTAAGA CTTTGTTGGC TCGTGCTATT
GCAGGCGAAG CTGGTGTGCC GTTCTATGCA ATGGCTGGCT CTGACTTCGT GGAAATGTTC
GTAGGCTTGG GCGCGTCTCG TGTTCGTGAA CTTTTTGACG AAGCTAAGAA GAATGCTCCT
GCCATCATCT TTATCGATGA GATTGATGCT GTTGGTCGTC GCCGCGGAAG TGGCATGACT
GGCGGTCATG ATGAGCGCGA GCAGACACTT AATCAGCTGC TTGTTGAGAT GGACGGCTTC
GACAACGACA CTAATTTGAT TATTATTGCC GCAACAAACC GTCCAGATGT GCTTGATTCC
GCACTTCTTC GTCCTGGTCG TTTTGACCGT CAGGTGGCTG TTGAGGCTCC TGATTTGGAA
GGTCGCGAGG CAATTTTGAA GGTTCACGCT AAGGGTAAGC CTTTTGTGCC GGATGTTGAT
CTTCATATGG TTGCTGTGCG CACTCCTGGT TTTACTGGTG CAGACTTAGC TAACGTGCTT
AACGAAGCTG CGTTGCTTTG CGCTCGCTCT GGTGCTCAAT ATATCGATAA TCGCGCTATT
GATGAGGCAA TTGATCGTGT TCAAGCAGGA CCTCGACGTA AGTCTAAGGG TATGGCTTTG
GATGAATTGC GTAACACTGC TTACCATGAG GGTGGTCATG CGCTTGTTGC TGCTGCGTTG
CACCACACGG ATCCTGTTAC TAAAGTAACG ATTTTGCCGC GAGGTCACGC ACTTGGCTAC
ACTGCTGTGA TGCCAACAAG CGACCGTTAC TCGCAGTCTC GCAACGAATT GCTGGATCAA
ATGGCATATG CTATGGGCGG ACGCACAGCA GAGGAAGTTG TGTTCCATGA TCCAACAACT
GGTGCTTCTA ACGACATTGA GAAAGCTACT GCTATTGCTC GTAAGATGGT TGTTGAATAT
GGTTTCTCAG CGAAGCTTGG AGCTGTTAAG TGGATGGATA CTGACGAAGA TTCTTCCGGT
TCACTCGATT CTTTGCAACC TCGTAAGTTC TCGAATCGTA CTGCTGAAGT AATCGATGAA
GAAGTTCATA AGCTTATCGA AACTGCTCAT ACTGAAGCGT GGGAGATTAT TAACAATAAT
CGTGACGTAT TAGATGAGCT GGTTCGTCAG TTGCTCGCTA AGGAAACTCT TAACGAGAAG
GAACTTAAGG AAATCTTCAG TAAGATTCGT AAGGCTCCTG AGCGTACTCT TTGGCTTTCG
GACGATAGAA GACCAGATTC TGATCTTCCT CCTGTTGAAA TTCCAGAAAG TTTAAAGCGC
AACGTTGAAG GTAAGAATGA GCAGAGTGAA GCTTCTGAAC TTTCTGAATC TTCCAATAAC
GCAACTTCAC AAAACCAGCA GTCTGATCAG ATGTCTGTTG ATACGTCTAT TCAGACTACT
GCACCTGCTC CTCGAACTGT TATTGGAACT GTTAAGCCAC CAGTTAATCC GTCTACTAAT
CAAAATGACG GCACTCAATT TGGTGCTTAA
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| Protein sequence | MGASPMTPQG PMGGPGRGNN GNNPFLNPRN PRNQRNNGQQ GKNNKNNENN HNNRRSFWQS
PWTWIVLLVL LSVVGFQMFV HNGSQTIDTQ DGIELVRSHK ASYVEIIDNK QLVKLTLDSP
FKKFDKRSKQ KRDFGKDVQF YYAYAQGRSI VQEVEKAKPS NGWTASLQSS SIISYLITSL
APILFFLGMI WFMFSRIGGA GGSMLGMGGG RGRGKLLEGQ TPKTKFADVA GEQAAVEEVE
EIKDFLKDPS RYKALGARIP RGVLLYGPPG TGKTLLARAI AGEAGVPFYA MAGSDFVEMF
VGLGASRVRE LFDEAKKNAP AIIFIDEIDA VGRRRGSGMT GGHDEREQTL NQLLVEMDGF
DNDTNLIIIA ATNRPDVLDS ALLRPGRFDR QVAVEAPDLE GREAILKVHA KGKPFVPDVD
LHMVAVRTPG FTGADLANVL NEAALLCARS GAQYIDNRAI DEAIDRVQAG PRRKSKGMAL
DELRNTAYHE GGHALVAAAL HHTDPVTKVT ILPRGHALGY TAVMPTSDRY SQSRNELLDQ
MAYAMGGRTA EEVVFHDPTT GASNDIEKAT AIARKMVVEY GFSAKLGAVK WMDTDEDSSG
SLDSLQPRKF SNRTAEVIDE EVHKLIETAH TEAWEIINNN RDVLDELVRQ LLAKETLNEK
ELKEIFSKIR KAPERTLWLS DDRRPDSDLP PVEIPESLKR NVEGKNEQSE ASELSESSNN
ATSQNQQSDQ MSVDTSIQTT APAPRTVIGT VKPPVNPSTN QNDGTQFGA
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