Gene HMPREF0424_1129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1129 
Symbol 
ID8709432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1301115 
End bp1302791 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content47% 
IMG OID646483220 
ProductABC transporter, ATP-binding protein YjiK 
Protein accessionYP_003374328 
Protein GI283783574 
COG category[R] General function prediction only 
COG ID[COG0488] ATPase components of ABC transporters with duplicated ATPase domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTGAAT TTATCTATCA GATGATTAAG GCGCGTAAAT CGTACGGAGA TCGTGTAATT 
CTCGACGATG TTACTTTAAG CTTCCTTCCG GGCGCAAAAA TTGGTGTTGT GGGTCCGAAC
GGCATGGGTA AGTCGACGCT GCTGAAAATT ATGGCCGGTT TGGAAAATGT GACCAATGGT
GAAGCTTCTT TGACTCCTGG CTATACGGTA GGTATTTTGC AGCAGGAACC ACCTCTTGAT
GACACTAAGA CGGTTGGCGA AAACATTAAG ATGGCTTTTG GTGAAATTGC GCAAAAAGTG
GCGCGTTTTA ACCAAATCGG CGAAGAAATG GCTAATCCAG ACGCTGATTT TGATGCGTTA
ATGGAAGAAA TGGGTAAGCT TCAGACTGAA ATTGACGCTG CAAACGGTTG GGATTTGGAT
TCGCAGCTTG AGCAGGCTAT GGATGCTTTG CAATGCCCAG ATCCGGATTC GCCTGTTTCT
GTGTGCTCTG GTGGTGAAAG GCGTCGAGTT GCATTGTGTA AGCTTCTTCT TGAAGCTCCA
GATTTGCTGC TTTTGGATGA GCCTACTAAC CATTTGGATG CGGAATCTAT TTTGTGGCTT
GAACAGTTCT TGCACAAGTA CGAGGGTGCT GTTATTGCTG TTACGCACGA CCGCTACTTT
ATGGATAACG TAGCAGAGTG GATTTGCGAA GTTGACCGTG GTCAGCTTTA TCCATATAAG
GGAAATTACT CAACGTATTT GGAAACTAAA GCAAAGCGTA TGGAAATCCA GGGTGCCAAG
GATGCCAAGC TTGCTAAGCG TTTGAAGAAT GAGCTTGATT GGGTGCGTAG CTCGCCGAAA
GCTCGCCAAG CTAAGAACAA GGCTCGTTTG GAACGCTACG ACCAAATGGA GCAAGAGGCA
CGTAATTCCA AGAAGCTTGA CTTCTCTGAA ATTCAAATTC CAGCAGGTCC ACGTTTGGGC
TCGCAAGTTT TGGAAGCAAA GCATATTCAC AAGGCTTTTG GCGACCGTGT ACTTATCGAC
GACTTGTCGT TTACGCTGCC TCGTAATGGT ATTGTTGGTG TGATTGGTCC AAACGGTGTT
GGTAAGTCTA CGCTGTTCAA GACGATTGTG GGCTTGGAGT CTCTTTCTGG CGGAGAGCTT
ATTGTTGGCG ATACTGTGAA GATTTCTTAC GTGGATCAGA ATCGTGCAGG ATTGGATCCT
AATAAGAACT TGTGGGAAGC TGTTTCCGGC GGACTTGATT TTATTGAGGT TGCAGGCGTT
GAGATTCCTA CTCGCGCATA TGTTGCAAGC TTTGGATTTA AAGGTTCGGA TCAGCAGAAG
CTTACTGGTG TGCTTTCCGG CGGTGAGCGT AACCGTTTGA ACTTGGCTTT GACTCTTAAG
CAGGGTGGAA ACTTGCTTCT TCTCGATGAG CCTACTAACG ATTTGGATGT TGAGACTTTG
GAAAGCTTGG AAAACGCTTT ACTTGATTTC CCAGGCTGCG CTGTTGTGGT TTCGCACGAT
CGCTGGTTCC TCGACCGAGT TGCAACGCAT ATTCTTGCTT GGGAAGGCGA CGACGAGAAT
CCTGCAAAGT GGTACTGGTT CGAAGGTAAC TTCCAAGCTT ACGAAGAAAA TAAGATTGCG
CGCTTGGGTG AGGAAGCTGC TCGTCCGCAT CGCTTGCACC GTAAGCTCAC TCGCTAG
 
Protein sequence
MAEFIYQMIK ARKSYGDRVI LDDVTLSFLP GAKIGVVGPN GMGKSTLLKI MAGLENVTNG 
EASLTPGYTV GILQQEPPLD DTKTVGENIK MAFGEIAQKV ARFNQIGEEM ANPDADFDAL
MEEMGKLQTE IDAANGWDLD SQLEQAMDAL QCPDPDSPVS VCSGGERRRV ALCKLLLEAP
DLLLLDEPTN HLDAESILWL EQFLHKYEGA VIAVTHDRYF MDNVAEWICE VDRGQLYPYK
GNYSTYLETK AKRMEIQGAK DAKLAKRLKN ELDWVRSSPK ARQAKNKARL ERYDQMEQEA
RNSKKLDFSE IQIPAGPRLG SQVLEAKHIH KAFGDRVLID DLSFTLPRNG IVGVIGPNGV
GKSTLFKTIV GLESLSGGEL IVGDTVKISY VDQNRAGLDP NKNLWEAVSG GLDFIEVAGV
EIPTRAYVAS FGFKGSDQQK LTGVLSGGER NRLNLALTLK QGGNLLLLDE PTNDLDVETL
ESLENALLDF PGCAVVVSHD RWFLDRVATH ILAWEGDDEN PAKWYWFEGN FQAYEENKIA
RLGEEAARPH RLHRKLTR