| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1129 |
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| Symbol | |
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| ID | 8709432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1301115 |
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| End bp | 1302791 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483220 |
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| Product | ABC transporter, ATP-binding protein YjiK |
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| Protein accession | YP_003374328 |
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| Protein GI | 283783574 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTGAAT TTATCTATCA GATGATTAAG GCGCGTAAAT CGTACGGAGA TCGTGTAATT
CTCGACGATG TTACTTTAAG CTTCCTTCCG GGCGCAAAAA TTGGTGTTGT GGGTCCGAAC
GGCATGGGTA AGTCGACGCT GCTGAAAATT ATGGCCGGTT TGGAAAATGT GACCAATGGT
GAAGCTTCTT TGACTCCTGG CTATACGGTA GGTATTTTGC AGCAGGAACC ACCTCTTGAT
GACACTAAGA CGGTTGGCGA AAACATTAAG ATGGCTTTTG GTGAAATTGC GCAAAAAGTG
GCGCGTTTTA ACCAAATCGG CGAAGAAATG GCTAATCCAG ACGCTGATTT TGATGCGTTA
ATGGAAGAAA TGGGTAAGCT TCAGACTGAA ATTGACGCTG CAAACGGTTG GGATTTGGAT
TCGCAGCTTG AGCAGGCTAT GGATGCTTTG CAATGCCCAG ATCCGGATTC GCCTGTTTCT
GTGTGCTCTG GTGGTGAAAG GCGTCGAGTT GCATTGTGTA AGCTTCTTCT TGAAGCTCCA
GATTTGCTGC TTTTGGATGA GCCTACTAAC CATTTGGATG CGGAATCTAT TTTGTGGCTT
GAACAGTTCT TGCACAAGTA CGAGGGTGCT GTTATTGCTG TTACGCACGA CCGCTACTTT
ATGGATAACG TAGCAGAGTG GATTTGCGAA GTTGACCGTG GTCAGCTTTA TCCATATAAG
GGAAATTACT CAACGTATTT GGAAACTAAA GCAAAGCGTA TGGAAATCCA GGGTGCCAAG
GATGCCAAGC TTGCTAAGCG TTTGAAGAAT GAGCTTGATT GGGTGCGTAG CTCGCCGAAA
GCTCGCCAAG CTAAGAACAA GGCTCGTTTG GAACGCTACG ACCAAATGGA GCAAGAGGCA
CGTAATTCCA AGAAGCTTGA CTTCTCTGAA ATTCAAATTC CAGCAGGTCC ACGTTTGGGC
TCGCAAGTTT TGGAAGCAAA GCATATTCAC AAGGCTTTTG GCGACCGTGT ACTTATCGAC
GACTTGTCGT TTACGCTGCC TCGTAATGGT ATTGTTGGTG TGATTGGTCC AAACGGTGTT
GGTAAGTCTA CGCTGTTCAA GACGATTGTG GGCTTGGAGT CTCTTTCTGG CGGAGAGCTT
ATTGTTGGCG ATACTGTGAA GATTTCTTAC GTGGATCAGA ATCGTGCAGG ATTGGATCCT
AATAAGAACT TGTGGGAAGC TGTTTCCGGC GGACTTGATT TTATTGAGGT TGCAGGCGTT
GAGATTCCTA CTCGCGCATA TGTTGCAAGC TTTGGATTTA AAGGTTCGGA TCAGCAGAAG
CTTACTGGTG TGCTTTCCGG CGGTGAGCGT AACCGTTTGA ACTTGGCTTT GACTCTTAAG
CAGGGTGGAA ACTTGCTTCT TCTCGATGAG CCTACTAACG ATTTGGATGT TGAGACTTTG
GAAAGCTTGG AAAACGCTTT ACTTGATTTC CCAGGCTGCG CTGTTGTGGT TTCGCACGAT
CGCTGGTTCC TCGACCGAGT TGCAACGCAT ATTCTTGCTT GGGAAGGCGA CGACGAGAAT
CCTGCAAAGT GGTACTGGTT CGAAGGTAAC TTCCAAGCTT ACGAAGAAAA TAAGATTGCG
CGCTTGGGTG AGGAAGCTGC TCGTCCGCAT CGCTTGCACC GTAAGCTCAC TCGCTAG
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| Protein sequence | MAEFIYQMIK ARKSYGDRVI LDDVTLSFLP GAKIGVVGPN GMGKSTLLKI MAGLENVTNG
EASLTPGYTV GILQQEPPLD DTKTVGENIK MAFGEIAQKV ARFNQIGEEM ANPDADFDAL
MEEMGKLQTE IDAANGWDLD SQLEQAMDAL QCPDPDSPVS VCSGGERRRV ALCKLLLEAP
DLLLLDEPTN HLDAESILWL EQFLHKYEGA VIAVTHDRYF MDNVAEWICE VDRGQLYPYK
GNYSTYLETK AKRMEIQGAK DAKLAKRLKN ELDWVRSSPK ARQAKNKARL ERYDQMEQEA
RNSKKLDFSE IQIPAGPRLG SQVLEAKHIH KAFGDRVLID DLSFTLPRNG IVGVIGPNGV
GKSTLFKTIV GLESLSGGEL IVGDTVKISY VDQNRAGLDP NKNLWEAVSG GLDFIEVAGV
EIPTRAYVAS FGFKGSDQQK LTGVLSGGER NRLNLALTLK QGGNLLLLDE PTNDLDVETL
ESLENALLDF PGCAVVVSHD RWFLDRVATH ILAWEGDDEN PAKWYWFEGN FQAYEENKIA
RLGEEAARPH RLHRKLTR
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