| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1127 |
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| Symbol | |
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| ID | 8709979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1298997 |
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| End bp | 1300820 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483218 |
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| Product | DEAD/DEAH box helicase |
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| Protein accession | YP_003374326 |
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| Protein GI | 283783572 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.652851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCATA CTCATCATGC TGCGTTCGCC CAAAAGCGAG GCGCGAAGAA TACCAAGAAC
GTCAAAAATA CTAGGAAATC AGCTGAAAAA CGCAATCCTT TTGAATATCA GGGTAGTCAT
AAAAATTACG GTTCTAATCA CGAGTTCAAT TCGCGCAGGG AGCGAAATCG CAAAGCAGAA
AAAGCTCGTC AAAAAGCGCG CGAAAAAGCC TTGCGCTATG AAGAAGTAGC TATTGCGGAT
GCTGAACAAG ATTTTGCTAA AAATAATTTT GCTAAGCATA ATATTGATAA AAATAATGTT
GTTAAAAATG ATATTGCAAA ATCTCATAAT ACAAAACAAA ATTCTGCAAT ATCTTTGCGT
CCTACTTCAA AAAAGCAAAA TCAAGATTCT CATAACGCAA CAATTATTCC AGACTCTGCT
ATTGAATCTT GTGAAAATTA CCGTGACGAT GTCACTTTTG CGCAACTTGG AGTCCCAGAG
CCCTTGGTAG AAGTGTTGCG TGCTGATGGG AAAACTACTG CATTCCCAAT TCAGCAAGCA
ACGCTTCCTG ATTCATTACA AGGTGCGAAT ATTCTAGGGC GAGGTCGCAC AGGAAGTGGT
AAAACATTAG CATTTTCTAT TCCACTTGTT GCGCGTTTAG CTGAGAATTT TGTTGATTTA
ATTCATTCTG ATAAAAACCG TAAGTCACGC GAGTCTAGTG AAATTCCTGC TCCTAGAGCA
ATAATTCTTG CTCCAACTCG CGAGCTTGTG CATCAAATTG ATGACGTAAT AGCGCCGCTT
GCTGCAGCTT ATGGCATGCG TACTGTGACA GTGTATGGAG GTGTGAGATA CCAGCGTCAG
GTATCGCAAC TTAAGCAGGG TGCGCAGATT GTGCTTGCTT GCCCTGGTCG TTTGGAAGAT
TTGCTGCGTC AGGGAGCACT TACGCTTGAA AAAGTGATGG TTAGTGTGCT TGATGAAGCA
GATGAAATGG CGGATATGGG ATTCCTTCCT GCTGTTACTA GACTTCTTGA ACAAGTTGCG
CCAGATGGTC AACGCATGCT GCTTTCTGCA ACGCTTGATA AGCAAGTTTC TACATTGGTT
GAGCGTTTCC TTCCAAATGC TGTTGTTCAT GCTGTGGATG ATGCTGATTG CCAAGTTGAC
ACTATGACGC ATCATATTTT TGCTGTGTCT GCAGGGGATA AATACGAAGT TTTGCGAAAG
CTTGCTTCTG GAAAGAAACG TTCTATATTC TTTACGCGCA CGAAATATCA AGCGAAGAAT
ATGGCGAAAA AATTTGTGCA GCAAGGTATT CCTGCAGTTG ATTTGCAAGG TAATTTGTCG
CAGAATCAGC GAGATCGTCA TTTGGCTGTG TTCGCTGAAG GCTTGGTGCG CGTGCTGGTT
GCTACGGACG TTGCTGCGCG AGGTATTGAT ATTAGCGACG TTGCATTAGT TGTGCAAACT
GAGCCTCCTG AGGATCCTAA GTCTTTCTTG CATCGTTCGG GTCGCACTGC TCGAGCTGGT
GAAGAAGGCG ATGTCGTAAC GCTTGTGCTT CCTAATCAGA AGCGCGCTGC TCATATGATG
CTTCGTAAGG CTGGAATTCA TGCGAAAGCT GAGGATGTGA GTCCTTCTTC ATCGGTTCTA
GATGAGATTG TTGGTGAAGC TGCCGAGCTT CAAGAAGGCT GGAGTATGCC GGAGCCGGAG
CAGCAGAAGC GTAAAGGTCG CGGTCGTGGA CGCGGTGGGC GCGGGCGCGT ACGTGGGCAA
CGTGGTGAGC GCAGTGAACG TCGTTGGCAC GGTAAACGTG GCGAACGCGG TAGTCGTGTT
CATCGCTTCG GTCGTGAGTT TTAG
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| Protein sequence | MPHTHHAAFA QKRGAKNTKN VKNTRKSAEK RNPFEYQGSH KNYGSNHEFN SRRERNRKAE
KARQKAREKA LRYEEVAIAD AEQDFAKNNF AKHNIDKNNV VKNDIAKSHN TKQNSAISLR
PTSKKQNQDS HNATIIPDSA IESCENYRDD VTFAQLGVPE PLVEVLRADG KTTAFPIQQA
TLPDSLQGAN ILGRGRTGSG KTLAFSIPLV ARLAENFVDL IHSDKNRKSR ESSEIPAPRA
IILAPTRELV HQIDDVIAPL AAAYGMRTVT VYGGVRYQRQ VSQLKQGAQI VLACPGRLED
LLRQGALTLE KVMVSVLDEA DEMADMGFLP AVTRLLEQVA PDGQRMLLSA TLDKQVSTLV
ERFLPNAVVH AVDDADCQVD TMTHHIFAVS AGDKYEVLRK LASGKKRSIF FTRTKYQAKN
MAKKFVQQGI PAVDLQGNLS QNQRDRHLAV FAEGLVRVLV ATDVAARGID ISDVALVVQT
EPPEDPKSFL HRSGRTARAG EEGDVVTLVL PNQKRAAHMM LRKAGIHAKA EDVSPSSSVL
DEIVGEAAEL QEGWSMPEPE QQKRKGRGRG RGGRGRVRGQ RGERSERRWH GKRGERGSRV
HRFGREF
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