| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1122 |
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| Symbol | |
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| ID | 8710049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1289816 |
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| End bp | 1291867 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483213 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374321 |
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| Protein GI | 283783567 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.642926 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGA ATAAAACGGC TCACTCTTCT AAAAATGATT CAGCTATTAG TTGGGAAACT
CTTAGCAGAC TTGCCTCTTA TGTGCTGGTG TATCGAGTTA AAATTTACGT AATTATTGCA
TCAATAATAG TTAGCGCAAT TGTGCAAGCT GCAAGTGCAG TGTTTTTGCA ATCTCTTGTG
GACTCGTATA TTCTTCCGCT TGTCGGTAAG CATAATCAGG ATTGGACGCC TCTTGTTCGC
ATGATTATTC TGATGGCAAG TGTTTACGCT GTTGGTGTGT TTTGTTCTTG GCTTTGGAGC
AGACTTGTTG CGAATATATC TGAAAGTGTT ATGCGTGATT TGCGAGATTC TATGTTTAAG
CATCAGCAGA AGCTTTCATT GCGTTACTTA GATTCTCAAG GTTACGGCGA TATTATGAGC
CGTTACACAA ACGATACTGA GGTTCTTCGT GAGGCAATTT CGTGGGCATT TCCGGACTCT
TTTTCTGCGC TAATGTCGAT TTTGGCAGCG TTTATATCTA TTATGTGTCT ATCGCTTCCG
GTTGCAGTTT TTGTAGTTAT ATTTACTGCA ATATTGCTTT ATTTAGTGCG TTTTATGCTA
AAGAAATCTG GCAGTCTATT TGAGCAATTC CAGCATGCAT TAGGTGAGCT AAATGAGTTT
GTTGAAGAAT CTGCAACAGG CAGCAAAGTG ATTAAAATTT TTAATCATGA GGCAGATTCT
ATTGAAAAAT TAGATAATTG CATAGAAAAA GTGCAAAAAA TTTCTGCAAG TGCAAATTCT
TATGCAAATA ATGTAATGCC TGTTATTAGT AATGCAAGCT ATTTGCTTTA TGTATTAATT
GCTTTACTCG GTGCGTGGGC TGCTTCAGCA GGTCTGCCAA CGCTGGGATT AGCTGGATCT
AGTACTCTTA CATTGGGTAC ACTTATATCT TTGCTGGCAC TTTCGCGCGC ATTTATTAAC
CCTATTGGCG AAATTACAAT GCAAGCTAAC GCACTTATGA TGGCTCTTGC AGGAGCTTCT
CGTATTTTTG AGTTACTTGA TGAAAAGCCA GAACTTGATT CTGGCAGTGT GCAATTAGTT
AAAGTGCGTG TACTTCAGTC TGATGAAGAT CTTGGAGAAA AATCAGCATT TGATGTGCTT
GAAGAAGTAG ATGAACAATC TGAAGGAAGC AATATTTATT GGGCTTGGAA AAGATCAAAG
CAAGATAATG GTACTAAAGC TAAAAAGCGC GCTCAAAACT TAAGTGAAAT GGCTCAAGAG
ATTGTGTGCC ATGCAAAGCG AGATGCTCGC ACTTCTAAGG ATGGCCGCTA TACTTTGCTT
CGAGGCGACG TGCGTTTTAC GGATGTTGTG TTTGGTTACA AAGAAAATCA TCCTGTTTTA
CACGATATTA CGTGGTTTGC AAAACCTGGT CAAAAAGTTG CTCTTGTTGG AGCTACAGGT
GCTGGAAAAA CTACTATTGC TAACCTTCTT ACGCGTTTTT ACGACATCGA TGATGGGCAA
ATTTTGTATG ATGGCATTGA CGTGCGCGAT ATTTGCAAAA CGGATTTGCG CCACGCTATT
GGCACTGTTT TGCAAGATGT GAATTTATTT ACAGGCACAA TAATGGACAA TATTCGTTAT
GGAAATCTTG ATGCTAGCGA CGAAGATTGT ATTCAAGCTG CAAAATTAGC TCATGCTGAC
GCGTTTATTT CTCATCTTCC TGACGGATAC AATACGCAGC TTAACAATGG TGGTGAAGGG
CTTTCTCAAG GTCAGAAGCA GCTTATTTCT ATTGCTCGTG CTGCAGTAGA AAATCCGCCT
GTGTTGATTC TCGATGAAGC AACTTCATCG ATTGACACGC ATACTGAAGA GTTAGTTCAG
CATGGAATGG ATTCTTTGAT GGAAAGGCGT ACTGTGTTTG TAATCGCTCA CAGACTGTCT
ACAGTGCGCA ATGCTGATGT GATTATGGTG CTGGATCACG GTCGCATTAT TGAGCGCGGT
TCACATGAGG AATTATTGGC AAAACGTGGG GAGTATTATC AGCTTTGCAC TGGAGCTGTT
GAGCTTGAAT AA
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| Protein sequence | MAKNKTAHSS KNDSAISWET LSRLASYVLV YRVKIYVIIA SIIVSAIVQA ASAVFLQSLV
DSYILPLVGK HNQDWTPLVR MIILMASVYA VGVFCSWLWS RLVANISESV MRDLRDSMFK
HQQKLSLRYL DSQGYGDIMS RYTNDTEVLR EAISWAFPDS FSALMSILAA FISIMCLSLP
VAVFVVIFTA ILLYLVRFML KKSGSLFEQF QHALGELNEF VEESATGSKV IKIFNHEADS
IEKLDNCIEK VQKISASANS YANNVMPVIS NASYLLYVLI ALLGAWAASA GLPTLGLAGS
STLTLGTLIS LLALSRAFIN PIGEITMQAN ALMMALAGAS RIFELLDEKP ELDSGSVQLV
KVRVLQSDED LGEKSAFDVL EEVDEQSEGS NIYWAWKRSK QDNGTKAKKR AQNLSEMAQE
IVCHAKRDAR TSKDGRYTLL RGDVRFTDVV FGYKENHPVL HDITWFAKPG QKVALVGATG
AGKTTIANLL TRFYDIDDGQ ILYDGIDVRD ICKTDLRHAI GTVLQDVNLF TGTIMDNIRY
GNLDASDEDC IQAAKLAHAD AFISHLPDGY NTQLNNGGEG LSQGQKQLIS IARAAVENPP
VLILDEATSS IDTHTEELVQ HGMDSLMERR TVFVIAHRLS TVRNADVIMV LDHGRIIERG
SHEELLAKRG EYYQLCTGAV ELE
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