| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1114 |
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| Symbol | dnaE |
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| ID | 8709009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1281397 |
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| End bp | 1284963 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483205 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_003374315 |
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| Protein GI | 283783561 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAGC CGGAAACCAA CTTCGTACAT TTGCACAATC ACACGCATTA TTCACTTCTA
GATGGTGCGT CAAAAATACC TGATTTAGTA GCGCGCGCTA AAGAATTAGG TATGCCGGCT
GTAGCTATTA CGGATCATGG CAACATGCAC GGCGCGTACG AAATGTGGAG TACGGCTGTA
AAAGCTGGGA TTAAGCCAAT TATTGGCATA GAAGCGTATG TTACTCCTGA AACAGCAAGA
CAAGACAAAA GTCGCGTGCA TTGGGGCACG GAAGATCAGC GTGCAGATGA CGTTTCTGGC
GGCGGTTTAA TTACGCATAT GACTTTGTGG GCGGAAAACG ATACTGGCTT AACAAATCTT
CTTAAAGCTT CGTCTGTGGC GAATCTTGAG GGTAGAGTTA TGCGCTACCC ACGTATGGAT
AAAGACGTGC TTTCAACCTA CTCAAAAGGT GTAATTGCGT CTTCAGGATG CCCTTCTGGA
ATTATCCAGA CGCGTCTTCG CTTAGGTCAG TTCAAAGAGG CTTTACGAGC AGCTGGTGAG
TTTCAAGATA TTTTCGGGCG TGACAATTTC TTTATCGAGC TTATGAATCA CGGGCTTTCT
ATTGAAACGC GCGTAACTAA AGACTTGCTT GAAATTGCAA AAAAACTTAA CGCACCTCTT
CTTGCAACAA ACGATTTGCA TTACGTTCAT GAAGAAGATC GTGAAGCGCA AGATGCTATG
CTTTGCATTA ATTCCGGCTC GCGCTTGGAC GATCCTGACC GTTTTAAGTT TGACGGTTCA
GGATACTATT TGAAGTCCGC TGAGCAAATG CGTGAGCTTT TTAAAGAATT TCCAGAAGCT
TGCGATAACA CGCTTGAGAT TGCTCGTCGA TGCAATGTTA TGTTCGACGA CGGCGAAGAT
GGCGCTTTTA TGCCGCAATT TGACTGCCCG GAAGGTTGGG ATGAGACTTC GCTATTCCTT
AAAAAAGTCG AGGAAGGTTT GGAGCGTCGT TACAATAACA ACATTCCAAT GGAAGTTTTA
AAGCAGGCTG ATTACGAGTG CGGTGTGATT TGCCAAATGC AATTCTGCGG ATACTTTTTA
GTTGTTGCAG ATTATATTAA TTGGGCTAAA GCGCATGGTG TAATGGTAGG TCCTGGTCGT
GGTTCTGCTG CAGGCGCTAT GGTTGCGTAC GCAATGGGCA TCACAGAGCT TGATCCTATG
AAGCATGGTC TGATTTTTGA ACGCTTCTTA AACCCGGAGC GCGTATCCTT GCCTGATATT
GATGTTGATT TTGACCCGGA TGGCAGGGCC AAAGTTCTTG AATACGTGGG CGAAAAATAC
GGTAGAGATA AAGTTGCTCA GTGCGTTATT TACGGAACTA TTAAAACGAA GCAAGCTCTT
AAAGATTCTG CGCGTATTAT GGGCTACGAG TTTTCAGTAG GCGAAAAAAT TACGAAAGTT
CTTCCTCCTG CTAAAAACGG CAAAGATATG AGCTTGCACG ATATTTTCGA CGAAAAATCA
AAGCGTTACG CTGAAGCGCG CGAGTTTCGC GAAATGTACG ACACGGATCC AGATACTCAT
CGCATTACGG AAGAAGCTAA GGGCATTGAA GGTTTGATTC GTCAAACAGG TGTGCATGCT
TGTGCAACAA TCATGGGCTC GGAGCCAATC ACAAACACTT CGCCACTTTT AGAGCGCACT
GACGGTACTA TTACTACAAC TTTTGAGTAT CACACTTGTG AAACGCTCGG TCTTGTAAAA
ATGGACTTTT TGGGTCTTTC CAACTTGACA GTTATTCGCG ATACTTTGCG AAATATCGAA
AATAATGGGA AGGATCCGAT TGATTATACT AAGATTCCGT TAGACGATAA AGCTACTTAT
CAACTGCTTT CTAGGGGTGA TACTTTAGGC GTTTTTCAGC TTGATTCCGA CGGTATGCGT
GCGCTTCTAC GTACTTTGAA ACCGGATAAT TTCAATGATA TTTCGGCTTT GATTGCACTT
TACAGGCCTG GTCCTATGGA TATGGATTCG CATACGAATT ATGCTAAGCG CAAGAATGGT
TTGCAAGATA TTATCCCTAT TCATCCAGAA GTTGCTGAGC CGTTAAAGGA AGTTCTGGAC
GAAACTTACG GTTTGATTGT TTACCAGGAG CAGGTGCAGT CTGCAGCGCG TATTTTAGCA
GGATACAGTC TTGGTAAAGC AGATGTGTTA CGTCGAGCAA TGGGCAAGAA AAAGCCGGAA
GTGCTGGCAA AAGAGCAGGT GCCATTCTTT GAAGGTATGA AAGCTCACGG ATATTCTGAA
GAAGCTGCAC AAGCTGTGTG GGATGTTTTG GTTCCGTTCT CTGGTTACGC GTTTAATAAA
GCTCACTCTG CAGCTTATGG CTTGATTTCT TACTGGACTG CATACCTAAA AACGCATTAT
CCTGTGGAAT TTATGGCAGC TTTGCTTCAA AACGAACGTA CGAATAAAGA CAAAACTGCA
CTGTACTTGG GCGAGGCAAG GCGCATGGGT ATTCAAGTTT TGCAACCTGA TGTAAACGAG
TCTGTTCTTG AGTATTCTGC AGTTGGAGAT GTTGTGCGCT TTGGTTTGGG TGCTATTCGT
AACGTTGGAG ACAAAGCAGT AAACGATATT ATTACTGAGC GTGAAGGTGA GCGCGGACGT
TTCGTAAACT TTATGGATTT TGTACAACGT GTTCCTATTA GTGCACTTAA TCGACGTTTA
GTAGAGTCGC TTATTAAAGC TGGAGCTTTT GATTCTATTG ATTCAAATCG TCGTGCGCTG
TTTCAAATTT GTGATCCTGC AATTGATTCT GTGATTGCGC TTAAGCGCAA GCAGGCAGAG
GGTCAGTTTG ATTTATTTGC TGATCTTGAT TCGTCTTCTG ACTCGGATGA CGACAACGGT
ATGGGAGATA TGCAAATTAC TGTACCTGAT GTTGAAGAGT GGGATAAAAA GACAAAGCTT
AATTTTGAGC GAGAAATGCT TGGATTGTAC GTTTCTGATC ATCCACTAAG CGGATTGTCT
GCAGTTTTGG CAGATTTACG TGAGATGTCA ATCGCTCAAC TGATCGACAG AGCAAGAACT
ATGAGCGACG GTCAGCAAGT AACTATTGCA GGCCTAGTTA CGAGCGTAGA TAGGCGAGTG
TCTCGAAAAG GTAATGCTTG GGCGATTGTC ACAGTTGAAG ACATGGAAAG TTCAATACAA
TGCATGTTCT TTGGCAAAGT GTACGAAGCT TCAGCGCAAG AACTTGCAAT TGATCAAGTT
GTGCGTATTC GTGGACAAGT TGAAGTGCGT GATGAAACTG TTTCCATGCG TGCTACAGAG
TTTGAAATAC CAACTCTTGA ATCAGTGGAT GAGAGACCTT TAACAGTTGT TATTCCTCGT
AAAGTTCTAG ATAAAGGTCG TGTTGCGCAA TTAAGTAATA TTTTGAGCCG ACATCCAGGC
TGCTGTGAAG TGCGCTTGGC TCTTGTCGAC GATACAGGCA AGGCACAAGT TCTTACTTTT
GGAGATCGTT TCCGTGTAAA GCGAGATACT TCTTTGTTTG CTGAAATGAA AATCGTTTTT
GGATCTAGTT GTTTGCCTAG TGCGTAG
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| Protein sequence | MTQPETNFVH LHNHTHYSLL DGASKIPDLV ARAKELGMPA VAITDHGNMH GAYEMWSTAV
KAGIKPIIGI EAYVTPETAR QDKSRVHWGT EDQRADDVSG GGLITHMTLW AENDTGLTNL
LKASSVANLE GRVMRYPRMD KDVLSTYSKG VIASSGCPSG IIQTRLRLGQ FKEALRAAGE
FQDIFGRDNF FIELMNHGLS IETRVTKDLL EIAKKLNAPL LATNDLHYVH EEDREAQDAM
LCINSGSRLD DPDRFKFDGS GYYLKSAEQM RELFKEFPEA CDNTLEIARR CNVMFDDGED
GAFMPQFDCP EGWDETSLFL KKVEEGLERR YNNNIPMEVL KQADYECGVI CQMQFCGYFL
VVADYINWAK AHGVMVGPGR GSAAGAMVAY AMGITELDPM KHGLIFERFL NPERVSLPDI
DVDFDPDGRA KVLEYVGEKY GRDKVAQCVI YGTIKTKQAL KDSARIMGYE FSVGEKITKV
LPPAKNGKDM SLHDIFDEKS KRYAEAREFR EMYDTDPDTH RITEEAKGIE GLIRQTGVHA
CATIMGSEPI TNTSPLLERT DGTITTTFEY HTCETLGLVK MDFLGLSNLT VIRDTLRNIE
NNGKDPIDYT KIPLDDKATY QLLSRGDTLG VFQLDSDGMR ALLRTLKPDN FNDISALIAL
YRPGPMDMDS HTNYAKRKNG LQDIIPIHPE VAEPLKEVLD ETYGLIVYQE QVQSAARILA
GYSLGKADVL RRAMGKKKPE VLAKEQVPFF EGMKAHGYSE EAAQAVWDVL VPFSGYAFNK
AHSAAYGLIS YWTAYLKTHY PVEFMAALLQ NERTNKDKTA LYLGEARRMG IQVLQPDVNE
SVLEYSAVGD VVRFGLGAIR NVGDKAVNDI ITEREGERGR FVNFMDFVQR VPISALNRRL
VESLIKAGAF DSIDSNRRAL FQICDPAIDS VIALKRKQAE GQFDLFADLD SSSDSDDDNG
MGDMQITVPD VEEWDKKTKL NFEREMLGLY VSDHPLSGLS AVLADLREMS IAQLIDRART
MSDGQQVTIA GLVTSVDRRV SRKGNAWAIV TVEDMESSIQ CMFFGKVYEA SAQELAIDQV
VRIRGQVEVR DETVSMRATE FEIPTLESVD ERPLTVVIPR KVLDKGRVAQ LSNILSRHPG
CCEVRLALVD DTGKAQVLTF GDRFRVKRDT SLFAEMKIVF GSSCLPSA
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