| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1107 |
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| Symbol | |
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| ID | 8708868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1273992 |
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| End bp | 1275833 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483198 |
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| Product | penicillin-binding protein, transpeptidase domain protein |
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| Protein accession | YP_003374308 |
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| Protein GI | 283783554 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCACT TAATCAAACA ACGTTTCGCT CCTCAGCAGA TATTTGCGCG TAAGTGCACC
GTAATTGCAA TTGTTTTTGC GTTAATTGGT GTTGGTGCAA TAGTAAAGCT AAGTTTTATA
CAGATTATTA ATGCTCGCTC AACTGCACAA GCAGCTCAGG CTGAGCGTAG TCGTGTGCGA
CCAATTCTTG CACGTCGTGG GCGCATACTT GATGCTAATG GTGCTGTGTT GGCTCAAAGT
GTTGAGCGAT TTAATATTAT TGGAGATCCA CTTAATGCTC AGGCTTTTGT TCCGACTCCT
TGCACAAAAC AAACCGAGCA TAACTGTCAT ATGCTTAATG GCAAGCCTGT AGAAGGCACG
GGCGCTGTGG CGGTCGCCCG TTTGCTTGCT CCGATTTTGC ACATGAGTTC TGTAGAACTT
GGTGGAAAAC TGGCTGGCGT TGGTCGTTAC GTTTTATTGA AACGTAACGT GACTCCTGCA
ATGAAACGTG CCATTGACGA TTTGAATCTT TCTGGGTGTA TTTATGCAGA GAACAGTAGT
GAACGAGTAT ATTCAAGCGG ACCTATTCTT GGATCTGTTA TTGGTGCTGT TGCTAATGCC
GATGAAGTTA ATCGTAAAGA TATTAAAGAT CGTAAAGGTG AGGTTGGTGT TACTGGTCTT
GAATTTACTA AAGATGCAAC TTTGAATGGC GTGGACGGAT ATCAGCGTTA TCAAGGTAAT
AATGCAGGAA ATGAGAAAAT TCCTGGTACT GTAACTGAAT CTAAGCCTGC AATCAACGGA
AGTGATGTTA AGCTCACAAT CGATAGCGAT GTCGATTGGT ATGTTAAAAA AGTTTTGCTT
GATGGCAAGA AAAAATATCA TGCAACTTGG GGTATTGCAA TAGTGCAAGA TGTTCGTACT
GGCGAAATAC TTGCTTTGGA AGATACTGAT GAGATTAAAG CTGGAACAAC GCAAGCTAAG
GTGAATGTTT CTAGAGCTGT AAGCCAAACC TTTGAGCCTG GTTCTATTGG TAAAGCTTTC
TCAATGTCTG GAATGTTACA AACTGGTGCG CATAAGCTTA CTGATAAATT TGCTGTTCCT
AATACTCTTA ATAAGAACGG TCAAGCATTC CATGATGCTG TTAGCCATGG TGTTGAGCGT
TGGACATTAG CTGGTATTCT TTCGGAATCT TCTAACGTCG GTATGGTTAT GGCTGGTGAA
AAATATCCGA TAGATAAACG CTATGAGTAT CTTTATAAAT TTGGTCTTGG TCAGTACTCG
GGATTGAATT TGCAAGGAGA ATCTTGTGGC TTGCTTCCTA GCGTTCAAGC TTGGGATGGT
CGTAAGAAAG ATACCGTTCT GTTTGGTCAG GGTTATGCTG TGAATGCTTT GCAGCTTACT
AATGCGATTG CAACTATTGC AAATAAAGGC GTTAGGTTGC GTCAGTCAAT AGTTAAATCC
GTTATAGATT CTAATGGTAG AGTTACGAAG TCTCCTCGTC CTGCAGGAAC GCGCGTTTTG
GATGAAAATG TTGCTGCACA AATGATGAAT GCTTTGGAAA ATTCTGGTGA GCATTATCAC
AGATTTGCTG GTGTCGATGG TTATCGTGTT GCTGCAAAGA GTGGTACAGC TGAAGTTGCT
GGCGCTGATG GTAAACTTAG CTCTACAATC AGCGACTGGT CGGGTGCTAT ACCAGCGGAT
AATCCTCGCT TCGTCATAAC AGTTGTTTTG CGTGATCCAC AAGGTATTTA TGGTGGTATG
ACTGCAGGTC CACTGTTCAA AACTATTGGA GAATTCTTAA TGCAAAAGTA TGATATTCCA
GCTTCTTCTC CACGCACAAA TCCTGTTCCT GTGAATTGGT AG
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| Protein sequence | MRHLIKQRFA PQQIFARKCT VIAIVFALIG VGAIVKLSFI QIINARSTAQ AAQAERSRVR
PILARRGRIL DANGAVLAQS VERFNIIGDP LNAQAFVPTP CTKQTEHNCH MLNGKPVEGT
GAVAVARLLA PILHMSSVEL GGKLAGVGRY VLLKRNVTPA MKRAIDDLNL SGCIYAENSS
ERVYSSGPIL GSVIGAVANA DEVNRKDIKD RKGEVGVTGL EFTKDATLNG VDGYQRYQGN
NAGNEKIPGT VTESKPAING SDVKLTIDSD VDWYVKKVLL DGKKKYHATW GIAIVQDVRT
GEILALEDTD EIKAGTTQAK VNVSRAVSQT FEPGSIGKAF SMSGMLQTGA HKLTDKFAVP
NTLNKNGQAF HDAVSHGVER WTLAGILSES SNVGMVMAGE KYPIDKRYEY LYKFGLGQYS
GLNLQGESCG LLPSVQAWDG RKKDTVLFGQ GYAVNALQLT NAIATIANKG VRLRQSIVKS
VIDSNGRVTK SPRPAGTRVL DENVAAQMMN ALENSGEHYH RFAGVDGYRV AAKSGTAEVA
GADGKLSSTI SDWSGAIPAD NPRFVITVVL RDPQGIYGGM TAGPLFKTIG EFLMQKYDIP
ASSPRTNPVP VNW
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