| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1079 |
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| Symbol | proS |
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| ID | 8709380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1234123 |
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| End bp | 1235955 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483171 |
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| Product | proline--tRNA ligase |
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| Protein accession | YP_003374282 |
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| Protein GI | 283783528 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCCA ATGTACTTCG TATGTCTCAG CTATTCCTTC GTACGCTGCG CGAGGATCCT
GCAGACGCGG ACGTGACTTC CGCAAAACTT ATGCAGCGCG CAGGCTATAT TCGTAAATCT
GCACCAGGTG TGTGGACTTG GCTTCCGCTA GGACTTAAGG TTTTGAACAA GGTTCAGGCG
ATTATTCGCG ACGAAATCAA CGGTATCGGT GCGCAGGAAG TTCACTTCCC GGCACTTCTT
CCGCGCGAGC CTTACGAGGC TACCAACCGT TGGGAAGAAT ATGGCGACAA TATCTTCCGT
CTTAAGGATC GCCACCAAGC TGACTATCTT CTTGCTCCAA CGCACGAAGA AGTTTTCACG
CTTCTCGTTA AGGATATGTA TTCTTCTTAC AAGGATTTAC CAGTTACTTT GTACCAGATT
CAAACGAAGT ATCGCGACGA ATTTCGCCCG CGCGCTGGCC TTATTCGCGG CCGCGAGTTT
ATTATGCAGG ATGGTTACTC GTTCTCGATT GACGAAGATG GTTTGAAATC TGCTTACGTT
GAGGAGCGCG CTGCTTACGC TCGAATTTTC GACCGTTTGG GCATTAAATA CGTGATTGTT
CACGCTGTTT CCGGCCCAAT GGGTGGTTCT GATTCCGAGG AATTCTTGGC TCCAATGCCA
ATTGGTGAAG ATACTTTTGC GCTCGCACCT TCAGGAAAAG CTTGGAATGT TGAGGCTCTT
ACCACTCCAG AAATGCAAGA TGTTGATTAC TCAGCAACTC CTGCAGCGCA ATCTCTCGAA
ACTCCAGACG CTAAGACGAT TGAAGCTTTG GTTAAGGTTT CTAACGACTT GCATCCGCGT
AAAGATGGTC GCGAATGGCA AGCAGACGAC ACTTTGAAGA ACTTGATTAT TGCTGTTAAG
CATCCGGCAG ATGCTGAAGG CGGCGAGCAT GAGGAGCCAT GGCGCGAAAT CGTGGCGATT
GGTATTCCAG GGGATCGCCA AGTAGATATG AAGCGTCTTG AAGCTCAGTT TGCTCCTGCA
GAAATCGAAG AAGCAACTGA GGATGATTTG AAGTCTCATC CTGAGTTCGT TAAGGGCTAC
ATTGGTTTTA GCGTATTAGG TCCTCAAGCT CGCAAAGAGG GTAGGGGTAT TGCAAATCCT
GTCCGCTACT TGATGGATGC TCACGTTGCA AAGGGAAGTG CCTGGATTAC AGGAGCTGAC
GAAGACGGAA AGCACGTTTA CAACGCTGTT TACGGCCGCG ATTTTGAGGC GGACGGTGTT
GTTGAAGCAG CCCAGGTTCG CGATGGCGAT ATGAGCCCAG ATGGTTCCGG TCCGCTTAGC
TTCGAACGCG GTGTGGAAAT CGGCCAGGTG TTCCAGCTTG GCTTAAAGTA TTCTAAGGCT
TTGGGCTTAA GCGTTCTTAA CGAAAATGGT AAAGCTGTGC CAGTTTGGAT GGGTTGCTAC
GGTATTGGCG TTAGCCGCGT GATCGCATGC TTGGCAGAAA CACATCACGA CGACGCTGGT
CTCGCATGGC CTATGGCAAT TGCTCCAGCT CAAGTTCATG TTGTTGCAAC AGGCAAAGAT
CAAGTTGCTT TCGACGCTGC TGAAAAGGTT GTTGAAGAGC TTAGTAAGCA GGGAATCGAA
GTAATCTTTG ACGACCGTCC AAAGGTTTCT CCAGGCGTAA AGTTTAAGGA TGCTGAGCTT
GTTGGCGTAC CGCTGATTGC TGTAGCAGGT CGCGATACCG TGAACAACGG TACGATTGAA
ATCCGCGATC GTAACGGCTC AAATGTTGAA GCAGTCCCAG TTGACGAGGC TGCTGCTCGA
ATCGTTGAGC GCGTCAGTGA GCTCTTAGCT TAA
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| Protein sequence | MNSNVLRMSQ LFLRTLREDP ADADVTSAKL MQRAGYIRKS APGVWTWLPL GLKVLNKVQA
IIRDEINGIG AQEVHFPALL PREPYEATNR WEEYGDNIFR LKDRHQADYL LAPTHEEVFT
LLVKDMYSSY KDLPVTLYQI QTKYRDEFRP RAGLIRGREF IMQDGYSFSI DEDGLKSAYV
EERAAYARIF DRLGIKYVIV HAVSGPMGGS DSEEFLAPMP IGEDTFALAP SGKAWNVEAL
TTPEMQDVDY SATPAAQSLE TPDAKTIEAL VKVSNDLHPR KDGREWQADD TLKNLIIAVK
HPADAEGGEH EEPWREIVAI GIPGDRQVDM KRLEAQFAPA EIEEATEDDL KSHPEFVKGY
IGFSVLGPQA RKEGRGIANP VRYLMDAHVA KGSAWITGAD EDGKHVYNAV YGRDFEADGV
VEAAQVRDGD MSPDGSGPLS FERGVEIGQV FQLGLKYSKA LGLSVLNENG KAVPVWMGCY
GIGVSRVIAC LAETHHDDAG LAWPMAIAPA QVHVVATGKD QVAFDAAEKV VEELSKQGIE
VIFDDRPKVS PGVKFKDAEL VGVPLIAVAG RDTVNNGTIE IRDRNGSNVE AVPVDEAAAR
IVERVSELLA
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