| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1068 |
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| Symbol | |
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| ID | 8709452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1219694 |
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| End bp | 1220602 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483160 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374271 |
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| Protein GI | 283783517 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.343066 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAT CTATGAAGCC TGTTGCTATT GTTGCATCTT TAGTAATGAT TGGCAGTATT
GCTGCATGTG GACCTGCTGA TTCTAAAGAA GCAGACCCTG ATGTTGCTCG TAGCTATGAT
GTAAGTCATG TGCAAAAGGA TGATGCTGTT GCAGTCTTGG TACCAGCACC AGTTGCAAAA
ACAGGAGAGT TAACTGTTGG TGTAAACGTA AGTTATGCCC CTGCAGAATT CTTTGCTGCA
GACGGTAAAA CTCCTGTAGG TTACGAAATT GATTTTTCGA AGGCTCTTGC AAAGGTCATG
GGCTTAAAAG CAAAAATTAT GCATGCTCAG TTTGACTCAA TTATTCCAGC AATAGGAAGC
AAATATAATG TCGGTATTTC TGGTTTTACA GTAAATGCTG AACGTATGAA GTCTGTAGAC
TTTATTACTT ATGCAAACGC AGGTTTGTCT TTTGAAGTGC GTAAGGGAAA TCCTACTAAA
GTAGATCCAA AGAACCTTTG TGGCAAGAAA GTAACTTTGG AAACTGGAAC TGTTGGCGAA
CCTATTATGG AAGAAGCAAA GAAACAGTGC GCAGCTAAAG GAAATAAGCC TCTTGAAATC
ATGAGCTTCA AGGAGCAAAC TGACGCAACT ACTGCACTTC TTTCCGGTCG CGCTGATGTT
ATGTATGCAG ATACTCCTGT TGCAGGTTAC GCTTCAATTA AAAATCCTGG AAAGCTTGAA
ATTTTGGAAA ACAGCAAGGA TTCTGAACCA ATGGGAGCGG CTGTTAAAAA GGGTGATGCA
GCGATGCTGA AGGCTGTAAA AGCTGGCATT GATAAGCTTA TGAAGTCCGG CGTCTACAAG
GATATCTTGA AGAAGTGGGG CGTTGAAGAT GTTGCTATTG AAAAGTCTGT AGTTAATCCA
AAACTATAA
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| Protein sequence | MFKSMKPVAI VASLVMIGSI AACGPADSKE ADPDVARSYD VSHVQKDDAV AVLVPAPVAK
TGELTVGVNV SYAPAEFFAA DGKTPVGYEI DFSKALAKVM GLKAKIMHAQ FDSIIPAIGS
KYNVGISGFT VNAERMKSVD FITYANAGLS FEVRKGNPTK VDPKNLCGKK VTLETGTVGE
PIMEEAKKQC AAKGNKPLEI MSFKEQTDAT TALLSGRADV MYADTPVAGY ASIKNPGKLE
ILENSKDSEP MGAAVKKGDA AMLKAVKAGI DKLMKSGVYK DILKKWGVED VAIEKSVVNP
KL
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