| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1064 |
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| Symbol | |
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| ID | 8709615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1214195 |
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| End bp | 1215637 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483156 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374267 |
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| Protein GI | 283783513 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.075314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAATC TTATGTCTGC ATTTGCAAGA ATTTTGCAAC AACGCAATCA TTTTTCGCGC
TTGCTTCTGT CGATGCTTTG TGTTTTTTCT TTGCTATTTT CTTGCGGATG CGGAACTAAA
GATTCTAGAA CTCAAATTAG TGTTTGGTCT TGGGAACCAA GCATGAAGCG ACTTGCTGAA
GAATTTGAAC TACATAATCC GGATGTTCAT GTAACTGTAA AGGATACTAG CGGATATAGC
AATCTTAATA GCGCTATTCA AGATGGCTAT GGTATGCCAG ATGTTGTTCA ATTAGAATAT
TTTGCTCTTC CGCAATATGC GGTAAGTGGA CAGCTTTTAG ATATTACTGA TCGTGTGAAA
AATACTCGCA CTTTCTATAC TCCTGGAACA TGGTCTTCTG TGCAACTTGG TGGACGTGTT
TACGGTTTAC CAATGGATTC TGGCCCAATG GCTTGGTTTT ATAATGATGA CGTGTTTAAG
CAGGCTGGTG TAGATGCCAC AAAAATACAC ACTTGGGAAG ATTACCGTCA TGCTGCTCGT
AAGCTTAAAG ATATCGGTGT GTATATTGCA GCAGACTCAG GTGACGCAAG TTTTTATAAC
GCTATGATTT GGCTTGCAGG TGGACACCCG TTTATGACTT CTCATGATGG GAAAACAGTT
ACTGTTAGAT TGAGTAAAGA TAAGGGTACT GAAGAGTTCA CAAAGTTCTG GCAATCAATG
ATTGATGAAG GATTGATTGA CATTAGAACT AGAACTTGGA GTCAACGTTG GAAGAACGGT
GTTGGAGCTG GCAAGATTGC TTCTGTTTTC TCAGGAGCCT GGATGCCGTC TTTGCTGCTG
GAAAATGTGC CTGGAACTGC AGGATTATGG AAGGTAACGA ATGTGCCAAC TATGCACGGA
GAAAAGCGTA ATGCAGAAAT GGGCGGTTCT TCGTTATCTG TGCTTAAATC GAGTCGTAAG
CCTGAAGCAG CAATGCGATT TGTGAATTTT GTATGCCATG ATATGCATGG AATTCGTACT
CGTGTCAATG GTGGAGCGTT TCCTGCAGAT GTTGTTACGC TTAGAGATAA GTCATTTTTA
GATAGAGCTA CTATTCGTGA TTCACGAGGT ATTGATATAC CCTATTTTGG CGGCCAGAAG
TTTAATCGTG TATTTGCAGA TGCCGCTAAT CGCGTGGATA CGGGATACAG GTATTTGCCT
TTTGAAGTGT ATTCGCGAAG TGATTTTAGA GCAACTATGG GTCAAGCATA TGACTGGAGT
GTTAAATCTT TAGCTAGATT AAACGTGCAA GCCATGATTG ATGCTGGTGT TACTCAAGAT
GATGGAAGTA AATTGTGGCT TCCAGATGAT CCTGGTAAGC GAATTTCTTT AAAAGATGGT
CTTTTATTGT GGGAAAAAGA TCTTCAAGAA TATGGTTACA ATCAAGGATT TGTAGTTAGA
TAA
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| Protein sequence | MANLMSAFAR ILQQRNHFSR LLLSMLCVFS LLFSCGCGTK DSRTQISVWS WEPSMKRLAE
EFELHNPDVH VTVKDTSGYS NLNSAIQDGY GMPDVVQLEY FALPQYAVSG QLLDITDRVK
NTRTFYTPGT WSSVQLGGRV YGLPMDSGPM AWFYNDDVFK QAGVDATKIH TWEDYRHAAR
KLKDIGVYIA ADSGDASFYN AMIWLAGGHP FMTSHDGKTV TVRLSKDKGT EEFTKFWQSM
IDEGLIDIRT RTWSQRWKNG VGAGKIASVF SGAWMPSLLL ENVPGTAGLW KVTNVPTMHG
EKRNAEMGGS SLSVLKSSRK PEAAMRFVNF VCHDMHGIRT RVNGGAFPAD VVTLRDKSFL
DRATIRDSRG IDIPYFGGQK FNRVFADAAN RVDTGYRYLP FEVYSRSDFR ATMGQAYDWS
VKSLARLNVQ AMIDAGVTQD DGSKLWLPDD PGKRISLKDG LLLWEKDLQE YGYNQGFVVR
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