Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1064 |
Symbol | |
ID | 8709615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1214195 |
End bp | 1215637 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483156 |
Product | extracellular solute-binding protein |
Protein accession | YP_003374267 |
Protein GI | 283783513 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.075314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAATC TTATGTCTGC ATTTGCAAGA ATTTTGCAAC AACGCAATCA TTTTTCGCGC TTGCTTCTGT CGATGCTTTG TGTTTTTTCT TTGCTATTTT CTTGCGGATG CGGAACTAAA GATTCTAGAA CTCAAATTAG TGTTTGGTCT TGGGAACCAA GCATGAAGCG ACTTGCTGAA GAATTTGAAC TACATAATCC GGATGTTCAT GTAACTGTAA AGGATACTAG CGGATATAGC AATCTTAATA GCGCTATTCA AGATGGCTAT GGTATGCCAG ATGTTGTTCA ATTAGAATAT TTTGCTCTTC CGCAATATGC GGTAAGTGGA CAGCTTTTAG ATATTACTGA TCGTGTGAAA AATACTCGCA CTTTCTATAC TCCTGGAACA TGGTCTTCTG TGCAACTTGG TGGACGTGTT TACGGTTTAC CAATGGATTC TGGCCCAATG GCTTGGTTTT ATAATGATGA CGTGTTTAAG CAGGCTGGTG TAGATGCCAC AAAAATACAC ACTTGGGAAG ATTACCGTCA TGCTGCTCGT AAGCTTAAAG ATATCGGTGT GTATATTGCA GCAGACTCAG GTGACGCAAG TTTTTATAAC GCTATGATTT GGCTTGCAGG TGGACACCCG TTTATGACTT CTCATGATGG GAAAACAGTT ACTGTTAGAT TGAGTAAAGA TAAGGGTACT GAAGAGTTCA CAAAGTTCTG GCAATCAATG ATTGATGAAG GATTGATTGA CATTAGAACT AGAACTTGGA GTCAACGTTG GAAGAACGGT GTTGGAGCTG GCAAGATTGC TTCTGTTTTC TCAGGAGCCT GGATGCCGTC TTTGCTGCTG GAAAATGTGC CTGGAACTGC AGGATTATGG AAGGTAACGA ATGTGCCAAC TATGCACGGA GAAAAGCGTA ATGCAGAAAT GGGCGGTTCT TCGTTATCTG TGCTTAAATC GAGTCGTAAG CCTGAAGCAG CAATGCGATT TGTGAATTTT GTATGCCATG ATATGCATGG AATTCGTACT CGTGTCAATG GTGGAGCGTT TCCTGCAGAT GTTGTTACGC TTAGAGATAA GTCATTTTTA GATAGAGCTA CTATTCGTGA TTCACGAGGT ATTGATATAC CCTATTTTGG CGGCCAGAAG TTTAATCGTG TATTTGCAGA TGCCGCTAAT CGCGTGGATA CGGGATACAG GTATTTGCCT TTTGAAGTGT ATTCGCGAAG TGATTTTAGA GCAACTATGG GTCAAGCATA TGACTGGAGT GTTAAATCTT TAGCTAGATT AAACGTGCAA GCCATGATTG ATGCTGGTGT TACTCAAGAT GATGGAAGTA AATTGTGGCT TCCAGATGAT CCTGGTAAGC GAATTTCTTT AAAAGATGGT CTTTTATTGT GGGAAAAAGA TCTTCAAGAA TATGGTTACA ATCAAGGATT TGTAGTTAGA TAA
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Protein sequence | MANLMSAFAR ILQQRNHFSR LLLSMLCVFS LLFSCGCGTK DSRTQISVWS WEPSMKRLAE EFELHNPDVH VTVKDTSGYS NLNSAIQDGY GMPDVVQLEY FALPQYAVSG QLLDITDRVK NTRTFYTPGT WSSVQLGGRV YGLPMDSGPM AWFYNDDVFK QAGVDATKIH TWEDYRHAAR KLKDIGVYIA ADSGDASFYN AMIWLAGGHP FMTSHDGKTV TVRLSKDKGT EEFTKFWQSM IDEGLIDIRT RTWSQRWKNG VGAGKIASVF SGAWMPSLLL ENVPGTAGLW KVTNVPTMHG EKRNAEMGGS SLSVLKSSRK PEAAMRFVNF VCHDMHGIRT RVNGGAFPAD VVTLRDKSFL DRATIRDSRG IDIPYFGGQK FNRVFADAAN RVDTGYRYLP FEVYSRSDFR ATMGQAYDWS VKSLARLNVQ AMIDAGVTQD DGSKLWLPDD PGKRISLKDG LLLWEKDLQE YGYNQGFVVR
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