Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1053 |
Symbol | |
ID | 8709297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1199570 |
End bp | 1200109 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646483145 |
Product | hypothetical protein |
Protein accession | YP_003374256 |
Protein GI | 283783502 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.4766 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGATA TAACATTGAG AAAAGCAACT CTTGGTGACT TGCGAAATAT TGAGCATATT TATGAAAATG CTCGCAAATT TATGCGTGTT ACAGGCAATC CTCATCAGTG GGGGAATAGT TTTCCACTTG TTTCAAGTGT TATTGAGGAT ATTCGTTTAA AACGTTTCTA TTTGATTGTT GACGAGGACC CAGAATCATG TAACGAGCGT ATTCTAGCGC AATTCGCATT ATGCGAAGGT GTTGATGAAG TGTATGCCAG TATTGACGGT GCGTGGCTTG ATGATATTTC CCCCTATGTA ACAATTCACC GCTTAGCATC TTCGGGAATA AAACCAAAAA TGGCAACAGC GTGCTTGCAT TGGGTGCAGC AAAACTATAA TAATGTACGC ATTGACACGC ATCCAGATAA CGTAATTATG CAAAAAGTAA TTACGCGTGC AGGGTTTAGT CGTTGTGGAT TGGTCGTTAT TCCAGATCGT GCACACAGTG CAGTACGTAT TGCATACCAA TGGGTGCAAA CACTTAATCA TGTCATATGA
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Protein sequence | MEDITLRKAT LGDLRNIEHI YENARKFMRV TGNPHQWGNS FPLVSSVIED IRLKRFYLIV DEDPESCNER ILAQFALCEG VDEVYASIDG AWLDDISPYV TIHRLASSGI KPKMATACLH WVQQNYNNVR IDTHPDNVIM QKVITRAGFS RCGLVVIPDR AHSAVRIAYQ WVQTLNHVI
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