Gene HMPREF0424_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1007 
Symbol 
ID8709776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1138733 
End bp1139740 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content37% 
IMG OID646483100 
Producthypothetical protein 
Protein accessionYP_003374214 
Protein GI283783460 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTGA AATATGAAAC AGCTAAATCT ATAGCTGAAC CGCTTTCGGA TAAATCGGGC 
ATGCCTCAAG GCAAAAGTGT TCATACTGCT CAGATTATGT TGTTGATTTG TGCTGCTATT 
TGGGGTGGCA GCTATGTTTC TTCAAAATAT GCTCTTGAAG TGTTTCCTGT GCAATGGCTT 
ATGGGCGTTC GTATGGTTGG AGCTTGCACA ATTATGGCTG TTATTTTTTT CGGTACGCTT 
CGTAAAACTT TTACAAAAAA GCTTATTGTT CCTTCTTTGC TAACTGGAAT TACGTATTAT 
GCTACTTTAA TTTTGCAAAC TGAAGGGTTA CGTTCAATTG ATCCAGGTCG TAGCGCGTTT 
TTGACAGCAG CATATTGCGT AATTACGCCA TTTTCTGCTT GGTTAATCGT CAAGAAAAAG 
CCAACTCTTT TAGGATTAGT AGCTGCAGTT ATGTGCGTTG CTGGAGTAGG TTTTGTGGCA 
TTAAAACCTG GAATGCTTGT GCTCACATTG TCTTATGGAG ATTTTCTTAC TCTATTATGT 
GCTGCAATTT TTGCTTTTAA TCTTACGTTC CTTGCGTATT ATTCTCGTAA ATATAATCCA 
GTTACGTTAA CTTTTGGGCA ATTTGTTGTT TCAGGCGTAC TTTTTGTAGC TGGTGCGCTT 
ATTTGTGAGC CTTTGCCAAA CTTTAACGCT GCTGATCATT TCTCTATTTT TGCTAATATG 
TTCTACCTTA CAGTAGTAGT AACAGTAGTT GCACAAATTA TGCAAAACTA TAGTTTGGTG 
AATCTTTCTA CTGCAAACGC TTCTGTGATT ATGTGCACTG AAAGTTTGTT CACGCTTTTA 
TTCTCTACTG TTCTTTTTCA TGAGCATGTT TCTAATATGG CTTTTGTGGG ATTTGCTTTA 
ATATTTGCTG CAATTATTAC TGCAAGCTTA GGTGAGCATT ATTGTGATAA AAAAGCGAAT 
TGTGAGCTTT CTTACAAAGA TAGAGATTTT GAGGTTGCTA AGTCTTAG
 
Protein sequence
MKVKYETAKS IAEPLSDKSG MPQGKSVHTA QIMLLICAAI WGGSYVSSKY ALEVFPVQWL 
MGVRMVGACT IMAVIFFGTL RKTFTKKLIV PSLLTGITYY ATLILQTEGL RSIDPGRSAF 
LTAAYCVITP FSAWLIVKKK PTLLGLVAAV MCVAGVGFVA LKPGMLVLTL SYGDFLTLLC 
AAIFAFNLTF LAYYSRKYNP VTLTFGQFVV SGVLFVAGAL ICEPLPNFNA ADHFSIFANM 
FYLTVVVTVV AQIMQNYSLV NLSTANASVI MCTESLFTLL FSTVLFHEHV SNMAFVGFAL 
IFAAIITASL GEHYCDKKAN CELSYKDRDF EVAKS