| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0942 |
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| Symbol | |
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| ID | 8709187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1082006 |
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| End bp | 1083694 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483039 |
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| Product | ComEC/Rec2-like protein |
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| Protein accession | YP_003374155 |
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| Protein GI | 283783401 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0658] Predicted membrane metal-binding protein |
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| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGAAA ACGTAGAAAA AGTAGAAAAC GTTTCTGGAA GTCGTGATTT TCGTATGATT
CCTGTTGCTG CAGCGTGCTG GGCTGGGTGC TTAATTGGAA AATTCTTATG CAATTTTACT
ATAATTTATT GCATTTCAAT AGTTTTATTC AATGCAACTA TAGTTTCGAT TTTTATATTT
TGCAAAAAAT TTAAGTTTTT TATATGGCGT AGAACAGTTT TAGTGATAAT AAACGCTTTT
GTAGCTGCGT TCATGCTTTC GTACATAACT CAATATGTGA TATCTGGTGA CGTTATTATG
CGAGAAATAC GCGGCAATAA TCCTACTAAA GCACTGTATT CTCGAGGAAA TAATGCCGGG
CGCGCACATT TTGCAGAATT TACAGTAGTT ACTCCTGTGC GCTCGTCTAG AAGTTTTAAA
GGAGATTGCC AAGCTAATGT TCAAGTGCAT AAGTTTGATG CGCAAAAAAG TTATGTTCAA
GCGCGACTGT ATGCGTATTT GCCAATATGC AAGCAACTTA GCTATGGTTC TAGCCTAAGC
GTTCCTGTTA GCGTGAAAGC TTCGAGATTT GATAGTAGTA AGCCTGAATT GCATGTAGAA
AAAACTCAAC GAAATTTGCA TGTTGTACAA GACTCAGACT TTTGGCACAA AGCCGTTAGT
AATTTGTGGA AATCGTTTTA TGACGTAACA AATAAGCTCG ATATGCAAGG CAGAATGTTG
GTTCCTGGAG TAACTGTTGG CATGCTTGGG CAAGAATATG TGCCAGTAGA GGATGCAAGT
TCACTTGAGC CGGTCGACGA AACTTATGCG AATATGACGC GTCAACATTT TCAACATGCT
GGAATCATGC ATGTTATGGC AGTTTCAGGC GGACACTTTT TGCTACTTAG TATGATTATT
CGCAAGTTTT GCGCACGATT ACTGTTGCCT CGTTGGTCTA CATCTTTAAT ACAAATTACG
TTGCAAATTG CTTTGGCTGC AATAGTTTAC CCTTCTGCAT CTGTGCTTCG AGCGTTAATT
ATGGGAATAA TATCCGCTGT TGCATGGTGT TGTAAACGAC CATACCAGTC AGCTAGTGCT
TTAAGTTGGA CTGTTATAGG CGTGCTTGTG GTAAATCCCT CATACGCTTG GGACTATGCT
TTTGCTCTTT CTTCCGCAGC AACTTTGGGA ATTGTTGTTA TGGGAGTGCC GATTTCTAAA
ACGTTTGCAA AATATATGCC ATCTTGTGTT GCTTCTGCGC TAGCTATAAC GCTTTCTGCA
CAATTTTGGA CTATGCCAGT GCAAATTCTT ATGCAACCGG AAGTGTCTTT TATGTCTGTG
CCAGCTAACT TAATAGTTGC GCCTCTTATG GATTGGGCAA CAGTGTTCGG CTTAATTTCG
CTAGTTTGTG CGAGCTTTAA CGATGGATTA TCGCTTATTT TTGCGAAAGC TTCATCAATT
GGAACAAGCT TTATGGAAAA GTGCGCGTAT TGGTGTGACG AAGCAGCTTT TGGTGTGTTT
CCTTGGATGA AGGGTGCTGC TGGAGCGTGG ATGATGGCAG GGGTAGAAGT TGCAATATTT
GCTGTTTTTA TGCTTGCTTT TCGTGTCTTT CACAATCGAG CTTGCGTTCA GCGTATGAGC
ATAATCGGGC AATTATGGGA ATCTTCTGCA AAGCGAACCA TAAGTGAAGC CGCGCAAATC
TTCGAGTAA
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| Protein sequence | MRENVEKVEN VSGSRDFRMI PVAAACWAGC LIGKFLCNFT IIYCISIVLF NATIVSIFIF
CKKFKFFIWR RTVLVIINAF VAAFMLSYIT QYVISGDVIM REIRGNNPTK ALYSRGNNAG
RAHFAEFTVV TPVRSSRSFK GDCQANVQVH KFDAQKSYVQ ARLYAYLPIC KQLSYGSSLS
VPVSVKASRF DSSKPELHVE KTQRNLHVVQ DSDFWHKAVS NLWKSFYDVT NKLDMQGRML
VPGVTVGMLG QEYVPVEDAS SLEPVDETYA NMTRQHFQHA GIMHVMAVSG GHFLLLSMII
RKFCARLLLP RWSTSLIQIT LQIALAAIVY PSASVLRALI MGIISAVAWC CKRPYQSASA
LSWTVIGVLV VNPSYAWDYA FALSSAATLG IVVMGVPISK TFAKYMPSCV ASALAITLSA
QFWTMPVQIL MQPEVSFMSV PANLIVAPLM DWATVFGLIS LVCASFNDGL SLIFAKASSI
GTSFMEKCAY WCDEAAFGVF PWMKGAAGAW MMAGVEVAIF AVFMLAFRVF HNRACVQRMS
IIGQLWESSA KRTISEAAQI FE
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