| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0911 |
|---|
| Symbol | |
|---|
| ID | 8708841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1040112 |
|---|
| End bp | 1041305 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646483009 |
|---|
| Product | shikimate dehydrogenase substrate binding domain protein |
|---|
| Protein accession | YP_003374125 |
|---|
| Protein GI | 283783371 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA CATATCATTG CGCAGTTTTG GGAGATCCTA TTTCGCATTC GCTGTCTCCT
GTGCTTCACA ACACGGCTTA TAAGGTTTTA GGTCTTACAA ATTGGCAATA TAGTAAGGAA
AAAGTAAGCG AAACAGAGCT TCGCGATTTT ATTGCGCATC TTGACGATTC TTGGAAAGGC
TTAAGCCTTA CTATGCCGCT TAAAAAAACC GTAATGAAAC TCGGTACACC TTGCGACTAC
TGGTCGCGCG CGCTTAACGT GGCAAATACT GCAGTTTTTA CTAGCAACCC AGCAACCGCT
TCGCAATCGC AAATAAAGCT ATACAACACT GACGTAAGTG GCATATTAAT AACATTTATG
CAAGCATTAC ATGAGCGCAT ATGCGAAGTA AAAAAGGCTG TTATTATTGG CAGTGGCAAC
ACTGCGTCCT CTGCATTGGC AGCTTTAATT GAAATTGCGC AAGTAGCAAA GCTTGAGCAA
GTGCAAGTTG TTGCTAGAAC TGAAGATGAC GGTAGTGTAA AAGGCGTTGA ACGTTTTAAT
AATCTTATAC AAAAGTATTG CGCTGATTTT CCAAATAAAA TAAGCATAGG TCAAAATAAT
AAAAGCGAAG AAAATGACGC TATGTATGAG CCTGTGCAAG GTATTGAGTT CCCAACAATA
AGCGAAGAAG TATTTTCAAA ATTTGCAGAC TATAGCGCAG AAAAATTGAG TGCAGAAAAA
TTGTCAGAAT GTGATAAATC TCTCATTTTG AAATCTTTAA ATTCACTCGA AACTGTTCGT
GCAATCGCAG AAGCAGACAT AGTCATAAGC ACAGTTCCAG CGCATGTAGC AGATCCAATT
GCGCTTGCGT TGAAAGCGTA CTGTCAAGAT AGTGCGAATA ATCAAACGAA ATTAGGAACA
TTGCTTGACG TAGTTTACGA TCCTCGCCCA AGCATGCTAC TTAGTGTATG GCAACAATAC
GGTTGCGCTA TTGGCGGAGA AGAAATGCTT TTGCAACAAG CTTTAGCACA AGTAAGTCTT
ATGACGATTG AGTACAGGCA ATCTAAAGAA AATTTTGGGA ATTGTGCTAA GACTGGCGCT
GAGGATTGTG CTGAGACTGG TTCTGAGCTT GGTTATAAAC CTAGTGCTGA CAAGGCTAGA
TATTACGATG ACTTAAGTAG TCTCATGCGA AAAGCCTTAC AGGAGGCATT ATGA
|
|---|
| Protein sequence | MLKTYHCAVL GDPISHSLSP VLHNTAYKVL GLTNWQYSKE KVSETELRDF IAHLDDSWKG
LSLTMPLKKT VMKLGTPCDY WSRALNVANT AVFTSNPATA SQSQIKLYNT DVSGILITFM
QALHERICEV KKAVIIGSGN TASSALAALI EIAQVAKLEQ VQVVARTEDD GSVKGVERFN
NLIQKYCADF PNKISIGQNN KSEENDAMYE PVQGIEFPTI SEEVFSKFAD YSAEKLSAEK
LSECDKSLIL KSLNSLETVR AIAEADIVIS TVPAHVADPI ALALKAYCQD SANNQTKLGT
LLDVVYDPRP SMLLSVWQQY GCAIGGEEML LQQALAQVSL MTIEYRQSKE NFGNCAKTGA
EDCAETGSEL GYKPSADKAR YYDDLSSLMR KALQEAL
|
|---|
| |