| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0898 |
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| Symbol | serB |
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| ID | 8709328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1023696 |
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| End bp | 1024370 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482996 |
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| Product | phosphoserine phosphatase SerB |
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| Protein accession | YP_003374112 |
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| Protein GI | 283783358 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0560] Phosphoserine phosphatase |
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| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTATGA ACTTTTCTTC GATGTTGCCA ACTTTGTCTA AACCAGGGCT TTTGGTTATG
GATGTTGATG CAACGCTTAT TGAGGAAGAA GTTATCGATT TGCTCGGTGC AGAAGCTGGA
TGCGGCGATG AGCTTTCTGC GATTACAGCG CGAGCAATGC GTGGCGAAAT TACTTTCGAT
ACTTCCTTGC GTTCGCGCGT GAGTATGCTT CGCGATTTGA ATATTGACGA GTGCAAAAAG
CGTATTATTT CTAAAATTCA TGTAACTAAA GGCGCGAATG TTTTAATTGA CACGCTTCAT
GCGCACGGAT GGAAAGTTGG CGCAGTTTCT GGCGGTTTTT ATGAGATTTT GGACGAATTT
TTGCCGAGTT TGAATATTGA TTTTTGGGCG GCTCACCATT TAGAGTCTAT TGACGGCAAG
CTTACTGGCA ACGTACTTGG AAATATTGTT AATGCTAATG CAAAAGTTGA AGCGCTTAGA
ACTTGGGTAA CTAATCTTGG AATTGATCGC GAACAAACTG TTGTAGTGGG GGATGGAGCG
AACGATATTT CAATGATTAA ATTCGCTGGA TTAGGCGTAG CTTTTTGCGC AAAACCAACA
GTTCAAGCGG CTACTCCTTA CTGCATTCTT ACTCGCGATT TAAGCGCTGT CTTGCGTTTT
TTGAATGCGA ATTAA
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| Protein sequence | MIMNFSSMLP TLSKPGLLVM DVDATLIEEE VIDLLGAEAG CGDELSAITA RAMRGEITFD
TSLRSRVSML RDLNIDECKK RIISKIHVTK GANVLIDTLH AHGWKVGAVS GGFYEILDEF
LPSLNIDFWA AHHLESIDGK LTGNVLGNIV NANAKVEALR TWVTNLGIDR EQTVVVGDGA
NDISMIKFAG LGVAFCAKPT VQAATPYCIL TRDLSAVLRF LNAN
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