| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0872 |
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| Symbol | |
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| ID | 8709051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 987304 |
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| End bp | 988521 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482972 |
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| Product | H+ Antiporter protein |
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| Protein accession | YP_003374089 |
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| Protein GI | 283783335 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00900] H+ Antiporter protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAT ACAACAATTG GAAACGAAAA TTTTATGCAA TATGGGCAGG GCAAGCAGTA
TCATTAATCA CTAGTGCCAT CCTGCAAATG GCGATTATTT TTTACCTTAC AGAAAAAACA
GGATCTGCGA TGGTCTTGTC TATGGCTTCA TTAGTAGGTT TTTTACCCTA TGCGATTTTG
GGACCTGCCA TTGGTGTGCT AGTGGATCGT CATGATAGGA AGAAGATAAT GATTGGTGCC
GATTTAATTA TCGCAGCAGC TGGTGCAGTG CTTGCTATTG TTGCATTCTG TATGGAGCTA
CCTGTCTGGA TGATTATGAT AGTATTGTTT ATCCGTAGCA TTGGAACAGC TTTTCATACC
CCAGCACTCA ATGCGGTTAC ACCACTTTTA GTACCAGAAG AACAGCTAAC GAAATGCGCA
GGCTATAGTC AGTCTTTGCA GTCTATAAGC TATATTGTTA GTCCGGCAGT TGCAGCACTC
TTATACTCCG TTTGGGATTT AAATGCTATT ATTGCCATCG ACGTATTGGG TGCTGTGATT
GCATCTATTA CGGTAGCAAT TGTACGTATA CCTAAGCTGG GTAATCAAGT GCAAAGTTTA
GAACCAAATT TCATAAGGGA GATGAAAGAA GGAGTTGTGG TTCTGAGACA AAACAAAGGA
TTGTTTGCCT TATTACTCTT AGGAACACTA TATACTTTTG TTTATATGCC AATCAATGCA
CTATTTCCTT TAATAAGCAT GGAACACTTT AATGGAACGC CTGTGCATAT TTCTATTACG
GAAATTTCCT TTGCATTTGG GATGCTAGCA GGAGGCTTAT TATTAGGAAG ATTAGGGGGC
TTCGAAAAGC ATGTATTACT AATAACAAGT TCATTTTTTA TAATGGGGAC CAGTTTAGCC
GTTTCGGGAA TACTTCCTCC AAATGGATTT GTAATATTCG TAGTTTGCTG TGCAATAATG
GGGCTTTCGG TGCCATTTTA TAGCGGTGTG CAAACAGCTC TTTTTCAGGA GAAAATTAAG
CCTGAATATT TAGGACGTGT ATTTTCTTTG ATCGGAAGTA TCATGTCACT TGCTATGCCA
ATTGGGTTAA TTCTTTCTGG ATTCTTTGCT GATAAAATCG GTGTAAATCA TTGGTTTTTA
CTATCAGGTA TTTTAATTAT TGGCATTGCT ATAGTTTGCC AAATGATAAC TGAGGTTAGA
AAATTAGATT TAAAATAA
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| Protein sequence | MEKYNNWKRK FYAIWAGQAV SLITSAILQM AIIFYLTEKT GSAMVLSMAS LVGFLPYAIL
GPAIGVLVDR HDRKKIMIGA DLIIAAAGAV LAIVAFCMEL PVWMIMIVLF IRSIGTAFHT
PALNAVTPLL VPEEQLTKCA GYSQSLQSIS YIVSPAVAAL LYSVWDLNAI IAIDVLGAVI
ASITVAIVRI PKLGNQVQSL EPNFIREMKE GVVVLRQNKG LFALLLLGTL YTFVYMPINA
LFPLISMEHF NGTPVHISIT EISFAFGMLA GGLLLGRLGG FEKHVLLITS SFFIMGTSLA
VSGILPPNGF VIFVVCCAIM GLSVPFYSGV QTALFQEKIK PEYLGRVFSL IGSIMSLAMP
IGLILSGFFA DKIGVNHWFL LSGILIIGIA IVCQMITEVR KLDLK
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