| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0845 |
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| Symbol | |
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| ID | 8709134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 956996 |
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| End bp | 958177 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482945 |
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| Product | periplasmic solute binding family protein |
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| Protein accession | YP_003374062 |
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| Protein GI | 283783308 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAACTT CACGAATTTT CGCAACTGCA GCTGCGGTTG CATTATTAGC AACTTCTATG
GGTGCTTGCG GCTCCGCAAA AAATGCCGAA AATAAGGCGA AGGGCAATCA AGTAAATGTA
GTGGCAACTA CAACTCAAAT TTGCGATTAC GTAACTCAAA TCGCTTCAAC TGCTGACGCA
AAATCTGGAT TGAGCCTCAA TAAGACTGAT TCTCAGGGCA AGAAGTCTGT AATCGGAGCT
CCTCAAGACA AAGCAAAGTC AACAATTAAT TTGACCTGCT TGCTTGCGCC AAACGCTTCT
GCTCATGAGC ATGAAATGAC TCCAGCTCAA TCTAAAGCTC TTTCTAAGGC TGATTTGATG
CTTGTTTCTG GTGTAGATCT CGAGCACTTC TTGGATCAAG CTGTGAAAGC TACCGGTTTT
AAGGGCACTA TGGGTGTAAC TTCCGGTATT CTCACTGCTG ACGAAATCAA GGATCCAAAG
GCTGAGACTG CTAAGGAAAA GGATCTTCCA TACAAGGTTG ATCGCGGTAT CGCTAAGGTG
CATGCTGAAA AGTGGCCATT CCCTCCAGAA GAAGGCGAGA AGGAGCCTGA ATTCCAGTAC
GATCCACATA TTTGGACCAG CACGAAGAAC ACGATGATTC AGGTTAAGAA TATTGGTTAT
TTCCTCGGAA AAGCTCTTCC TAAGAGCAAA TCTATTTTCG ATGAGCATGT TGAAAAGTTC
GTTAAGTCTT TGACTGATTT GGATGCTTGG GCAACTAAAG CTTTGAATAG TGTGCCACAA
AAGCATCGTG TTCTCTTCAC TTCTCACGAT GCATTCGGTT ACTTCTCTCG TGACTACAAT
GTGAAGTTCA TTGGTGCAGC ACTTTCTGAT TTCAACAGCC AGCAGGATGC TACTGCAGAT
CATATTCAGA AAGCTGCAGA AGATGTCAAG AAGTCCGGAG CTGTTGCGAT TTTTGCTGAG
AATTCTAACA ATTCCAAGTC TATCAAGGCT GTTGCTGCAG CAGCAGGAGT AAAGGCTGTT
ATTGGCGACG ACGCACTTTA TGGAGATTCG CTTGGACCAG TCGGATCTGC AGGCGAAACT
TACATCGGTT CCATTGTTCA CAATGTTGAA ACATTGGTGA AAGCTTGGAA TGGTAATGTT
CCTGAACTTC CAGATTCAGT TAAGACTGCA TTGAAGAAGT AA
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| Protein sequence | MKTSRIFATA AAVALLATSM GACGSAKNAE NKAKGNQVNV VATTTQICDY VTQIASTADA
KSGLSLNKTD SQGKKSVIGA PQDKAKSTIN LTCLLAPNAS AHEHEMTPAQ SKALSKADLM
LVSGVDLEHF LDQAVKATGF KGTMGVTSGI LTADEIKDPK AETAKEKDLP YKVDRGIAKV
HAEKWPFPPE EGEKEPEFQY DPHIWTSTKN TMIQVKNIGY FLGKALPKSK SIFDEHVEKF
VKSLTDLDAW ATKALNSVPQ KHRVLFTSHD AFGYFSRDYN VKFIGAALSD FNSQQDATAD
HIQKAAEDVK KSGAVAIFAE NSNNSKSIKA VAAAAGVKAV IGDDALYGDS LGPVGSAGET
YIGSIVHNVE TLVKAWNGNV PELPDSVKTA LKK
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