| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0819 |
|---|
| Symbol | |
|---|
| ID | 8709299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 928072 |
|---|
| End bp | 929259 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646482920 |
|---|
| Product | aminotransferase, class I/II |
|---|
| Protein accession | YP_003374037 |
|---|
| Protein GI | 283783283 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGATTTT CTTCTAGAAT AGATGTGAGT GAGCCAAATC CTATTATTTT AGCTCAGCGA
AAAGCTATTT TTAATGGTGT AAAGCTTACT AAATTAAACG ATTCCAATCC AACGTCTCAC
GGCTTAGCGC CTCAATGTTT AAGTGGACGT TACACGGCAG ACCCTAGGGG TCCTAAGGAA
ATTCGCGATA TTCTTTCAAA CTTTATCAAT AAGCGAGATA ACCGCACTGA AAAGTCTGTT
CCATCAAAGC TTAATCCAGA TCAGCTTTAT GTGCTTTCTT CAACTTCTCA AGCTTACGCA
TGGCTTATGA TGCTTTTATG TGATGCAGGG GATGCCGTTA TGGGACCGAC TCCTGGATAT
CCTCTTATAG AGTCTATTGC GCGCTTGCAA TGCGTGAATG CAATACCGTA TCCTTTGCAC
TATGATGGTT CTTGGACTAT TGATATTGCG CGTGTTAGAG AACTTTTAGA AGATGTGTCT
TTGCGTATTA AAGCTCTTGT GCTTATTAAT CCAAATAATC CTACAGGCTC ATATGTCAAG
CCTGAAGAAC GTGGAATACT ATTGCAATTA TGTCGTGATA ATGGTGTTGC GATTATTGCA
GACGAAGTAT TTTATGAATA TTCGCTTGAA CCTTTTGCTG GAAATGCTCG TCTTGCTGGA
GAATCTTCTA CTTTAGTTTT TGCGCTTGAT GGATTCTCCA AAATGCTTGC TGCTCCTCAC
GCAAAAGTTG GTTGGATTGA AGTTTCAGGT CCTAAAGATG ATGTTTATGA AGCACAAAAA
AGGCTTGACG TTATAGCGGA TGATTTTTTG CCTATTGGTA ATACTGTTTC TGAGCGAATA
CCAGAATTAT TGCAATATGC ATCTTCTCAA AGCGCTATTG TACGAAATCG TATTATTAAT
AATCTGCATA CGCTTCGAGA AACGTTGGCA TCCACGCCTA AATGCTGTGT TAGCGCGTTG
CGTGCGGAGG GCGGATGGAA TATTTTATTG CGTGTACCAT CTTGCATTGA CGATGATGTA
TTAGCTTTGA GATTGATGAA AGATTATAAT TTAGTTTCTC AACCTGGATA TTATTTCGAT
ATGCCAGTTA ATGGGTATTT AGCATTGTCA TTATTGCCAG AGCCGCAACA GTTTATTAGC
GGATTGCATG CGCTTCTTCG AACTGTAGAT GCATTGTTAG AAGAATAG
|
|---|
| Protein sequence | MRFSSRIDVS EPNPIILAQR KAIFNGVKLT KLNDSNPTSH GLAPQCLSGR YTADPRGPKE
IRDILSNFIN KRDNRTEKSV PSKLNPDQLY VLSSTSQAYA WLMMLLCDAG DAVMGPTPGY
PLIESIARLQ CVNAIPYPLH YDGSWTIDIA RVRELLEDVS LRIKALVLIN PNNPTGSYVK
PEERGILLQL CRDNGVAIIA DEVFYEYSLE PFAGNARLAG ESSTLVFALD GFSKMLAAPH
AKVGWIEVSG PKDDVYEAQK RLDVIADDFL PIGNTVSERI PELLQYASSQ SAIVRNRIIN
NLHTLRETLA STPKCCVSAL RAEGGWNILL RVPSCIDDDV LALRLMKDYN LVSQPGYYFD
MPVNGYLALS LLPEPQQFIS GLHALLRTVD ALLEE
|
|---|
| |