| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0812 |
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| Symbol | |
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| ID | 8708786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 914085 |
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| End bp | 916124 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482913 |
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| Product | AMP-binding enzyme |
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| Protein accession | YP_003374030 |
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| Protein GI | 283783276 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCGAG AATTTGCTGT AGAAGCCATT CACCCAACTC AAGACGGTGA TACCATTTAT
TCCTTACTCG CCAATCGTGC TATGCGTAGC CCACAAGACT TGGTTGCTCA ATGGCAAGAC
GATGAAACTC GTCGTTGGCA TGATGTTACT TCATCTGAAA TGCTCGCGAA AGTTCGTGCA
GTAGCTCGAG GCTTAATAGC ACTCGGAGTT CAGCATGGCT CCAAAGTTGT TATTTACTCT
GCTACATGTT ATGAGTGGGG TATTGTCGAT TTTGCTTGTG CATGTATTGG TGCTGTAAGC
GTTCCTATTT ATGAAACAGA TTCAGCATTG CAGGCAGCTG ACATTATCGA TGAAGTTAAG
CCAGTTATTG CTTTTGCTGG AGACGATGCG CATGCTCAAT GCTTAGAGCG TGTTCGTCAG
GATCATAAAC ATATAACTTT GAAAACCGTA TTTAATTTCA AAGCTGGTGG CTTGGAAGCA
GTTGTTGATT TTGGTAGATC TATTACTGAG GATGAGCTTA ATAAAGCTGT TGATGTTGTT
AAGGCAGATG ATTTAGCTAC TATTGTTTAC ACCTCTGGCT CGACTGGTAG ACCTAAAGGC
GCAATGCTTT CAAATCGTAA TTTTACGCAT ATTGTTTTTG CTGGTTACGA TGTTCTTAAC
GATATGTTAT GCAAACCAAA TCGTTTGCTT TTATTCCTTC CATTGGCGCA TTGTTTTGCT
CGGTACATTC AATATGTTGC TATTGGTGCT CACGGTGTTA TTGGATATGT GCCTAATGCT
AAGCATCTTT TGGCTGATTT GCGTAGTTTT AAGCCTACGT ATTTACTTGG CGTGCCTAGA
GTTTTTGAAA AAGTTTATAA TGCTGCGTCA CAAAAAGCTG GTGCTGGCAT AAAGGGTCGT
ATCTTTGCTA AAGCTGTAAA GCATTTCATT CAATGGTCTC GCGACAATGT TGAAGGTAAA
ACTCATTCTC TTGCTGCACG CATGAATCAT GCGATGTACA TGAAAACAGT TGGTTCTTCT
ATTCGTTCAG CTTTAGGTCC TAATCTTTCA TGGTTAGCTT GCGGTGGAGC TCCAATGGAT
GCTGATTTGG CTCATTTCTT TAATGGTCTT GATGGTATTA CTTTTATTCA AGGGTATGGA
ATGACTGAAA CTGCCGCTCC TTGTGTAGTT AATTTTGAGC ATGCAAATCA AGTTGGATCT
GTAGGTCGAC CTGGTCCTGG TATAGCTATC CGTCTTGCTG ACGACGATGA AGTGCTTATT
AAAGGTCCTA ACGTATTTAT GGGATATTTC AATAAGCCTG AGCTTACTGC AGAAGTTATT
GACGAAGATG GATGGTTGCA TTCAGGCGAT CTTGGCTCAA TAGATGATGA AGGATTCTTG
TCTATTACTG GTCGCAAAAA AGATATTATT ATTACTGCCG GTGGCAAGAA TATAAGTCCT
GCTCCTATGG AAGGTATTAT TGCTCAATGC CCATTAGTTT CTCATGCTGT AGTAGTGGGC
GATGGTAAGC CATTTGTTTC TGCTTTAATT GAGCTTGATC CAGATATGGT TCGTTCTTGG
CTAAAGAATA AGGGTATGGA TGTTAACCTT ACTATGAGTG AGATTGCTAC TAACGAAGCA
GTGCGTTCAG TAATTCAGCA ATTTATTGAC CAAGCTAATA GTACTGTTTC TCGCGCTGAG
TCTGTTCGTA AGTTTGTTAT TTTGCAAGAT GAATTTACTC AAGATGCTGG AACCTTGACT
CCAAGTATGA AGATTGTTCG TCCGAAGATT CTTGCTCGCT ATGCTGATAT TATCGAAACG
CAATTGTATG CTCCAAAGCC TAATACTCGT CCTTTGCCAG CAACTGTAAA GATTCTCGAT
AAAACTACTG AGACTGTTAA GCAAGCACAG GAGACTGTTA AGCAAGCTCA GGAAGCTGTA
ACTCCTCGAG TACGTCAAGC TATCGATCAA GCTGCGAATC ATTTGAAGCG TTTTGGTGAA
GAATCTTCAT CAGATTCCTC TTCGACATCG CATAGTGATC ATAATGAACA TGTCGAGTAA
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| Protein sequence | MLREFAVEAI HPTQDGDTIY SLLANRAMRS PQDLVAQWQD DETRRWHDVT SSEMLAKVRA
VARGLIALGV QHGSKVVIYS ATCYEWGIVD FACACIGAVS VPIYETDSAL QAADIIDEVK
PVIAFAGDDA HAQCLERVRQ DHKHITLKTV FNFKAGGLEA VVDFGRSITE DELNKAVDVV
KADDLATIVY TSGSTGRPKG AMLSNRNFTH IVFAGYDVLN DMLCKPNRLL LFLPLAHCFA
RYIQYVAIGA HGVIGYVPNA KHLLADLRSF KPTYLLGVPR VFEKVYNAAS QKAGAGIKGR
IFAKAVKHFI QWSRDNVEGK THSLAARMNH AMYMKTVGSS IRSALGPNLS WLACGGAPMD
ADLAHFFNGL DGITFIQGYG MTETAAPCVV NFEHANQVGS VGRPGPGIAI RLADDDEVLI
KGPNVFMGYF NKPELTAEVI DEDGWLHSGD LGSIDDEGFL SITGRKKDII ITAGGKNISP
APMEGIIAQC PLVSHAVVVG DGKPFVSALI ELDPDMVRSW LKNKGMDVNL TMSEIATNEA
VRSVIQQFID QANSTVSRAE SVRKFVILQD EFTQDAGTLT PSMKIVRPKI LARYADIIET
QLYAPKPNTR PLPATVKILD KTTETVKQAQ ETVKQAQEAV TPRVRQAIDQ AANHLKRFGE
ESSSDSSSTS HSDHNEHVE
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