| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0805 |
|---|
| Symbol | cdsA |
|---|
| ID | 8709899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 908887 |
|---|
| End bp | 909918 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 646482906 |
|---|
| Product | phosphatidate cytidylyltransferase |
|---|
| Protein accession | YP_003374023 |
|---|
| Protein GI | 283783269 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0575] CDP-diglyceride synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA TAAAACAGCA TAATTTTGCC AATGAAGTCA GTAAAGCAAA TGCTGAAAAA
ACTGCATCAG AAGTAGGATT GTCTTTTGAC AAAGCAGATA CTGCTACACA TGGCACCCAT
GAAACTTTAA GTGATATTAA TCGTCGCACG GGCAGGAATA TGCCTCAAGC AATTGCTACT
GCCGCAATAC TAGTTGTAGC AATTGTTTCT TGCTTAATTA TTAGCATTGA TGTCTTTATA
GTGCTTATGG CCATTTTTAT GGTTCTGGCA TTGTGGGAAT TACATGTTGA TTTTGCAACT
CTCGGTTTGC GTATTCCTTT CGTAACGTTA TCAATATGTT CGCTTGTAAC TATTTTTGCA
ACATACTATG CAAAATGGCA TGCTGTTGCT ATGGCTAGTG GAATTACTGC ATCTTTGCTT
CTTACAGTAA TTTGTGCGAC TCTTAGCAGT ACTATTTCAG ATAGAACGAT GCAAGCTGTA
GAAAAAAAGC TCGATGGTTC TAACCGCTCA TCATACGAAC ATACTTTATT TACGAATACG
TCTGTTTCGC TATTCGTGGT GTTGTACATT CCACTTTTAG CTTCTTGCAT TGTATTAGCT
CTTACAAATA CAAAATACGC AGTTGCTCAC GCTATGCTTT TGGTATTTTT ACCTGCATTA
AGTGACACTG GCGGATTATT TGCTGGTGCA TGGTTGGGCA AACATAAGCT TTCTCCGCGA
ATCTCTCCTA AGAAGTCTGT AGAAGGCTTA ATAGGCTCAA TGCTTTTTGC AATTATAGGA
GCATATGCAA TTATTGCAGG TTTTTATGGT TCTTCTTGGT TCAATTTCTG GTGGATGCCA
TTAGTCATGG GTATTTCTTC TGGAATTATT GGCACATTCG GTGACTTGTG TGCCTCTATG
CTTAAAAGAG ATATTGGTAT TAAAGACATG GGACATTTGC TAAAAGGTCA TGGTGGTGTT
CTTGACCGAG TAGATTCTAT TTTGCTGTGC GGTCCTGTGC TGCTTGTGCT TTTGCAACTT
GCTCATTTCT GA
|
|---|
| Protein sequence | MSQIKQHNFA NEVSKANAEK TASEVGLSFD KADTATHGTH ETLSDINRRT GRNMPQAIAT
AAILVVAIVS CLIISIDVFI VLMAIFMVLA LWELHVDFAT LGLRIPFVTL SICSLVTIFA
TYYAKWHAVA MASGITASLL LTVICATLSS TISDRTMQAV EKKLDGSNRS SYEHTLFTNT
SVSLFVVLYI PLLASCIVLA LTNTKYAVAH AMLLVFLPAL SDTGGLFAGA WLGKHKLSPR
ISPKKSVEGL IGSMLFAIIG AYAIIAGFYG SSWFNFWWMP LVMGISSGII GTFGDLCASM
LKRDIGIKDM GHLLKGHGGV LDRVDSILLC GPVLLVLLQL AHF
|
|---|
| |