Gene HMPREF0424_0803 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0803 
Symbolrpe 
ID8709838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp907182 
End bp907847 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content43% 
IMG OID646482904 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_003374021 
Protein GI283783267 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATAC AAATAGCACC TAGCATTCTT TCCGCAGATT TTTGCAATCT TGAGCGTGAC 
CTTGATGCAA TATCTAATGC GGATCTTGTT CATGTCGATG TAATGGATCA TCACTTTGTA 
CCTAATTTGA CTTTGGGTGA ACCAATTGTT AAGCGAATTT GTGAGGTTAC TAAACTTCCA 
GTTGACGTAC ATTTGATGAT TGAGGATCCA GATCGTTGGG CTCCAGAATA CGCTAAGCTT 
GGAGCTGCTT CTGTGAGTTT CCATATGGGT GCTACTCATG CTCCAGTGAG ATTAGCTCGT 
CAGCTTCGCG ATATGGGTTG TAAAGCTTGC TTTGCTGTGC GCCCTGCGGA ACCAGTTGAA 
CCTATTTTCG ATATTCTTGA TGAATTCGAT ATGGTTCTTA TTATGACTGT TGAGCCTGGT 
TTCGGTGGAC AGAAGTTCTT AGCTAATCAA ATGAATAAGG TTCGCCGTTT ACGTGACGAA 
ATTACTCGTC GCGGATTGCA GACTCATATT CAGGTCGATG GAGGAGTTAG CCCTTCAACT 
GCAGCAATAG TTGCTGAAGC TGGTGCTGAT GTGCTTGTTG CAGGTTCTGC AGTTTATGGA 
GCAGAAAGTC CTAAAGAGGC GATTGAAGCT ATTCGTAATA CTGCAAAAGC TGCTTGGCAC 
GAATAA
 
Protein sequence
MNIQIAPSIL SADFCNLERD LDAISNADLV HVDVMDHHFV PNLTLGEPIV KRICEVTKLP 
VDVHLMIEDP DRWAPEYAKL GAASVSFHMG ATHAPVRLAR QLRDMGCKAC FAVRPAEPVE 
PIFDILDEFD MVLIMTVEPG FGGQKFLANQ MNKVRRLRDE ITRRGLQTHI QVDGGVSPST 
AAIVAEAGAD VLVAGSAVYG AESPKEAIEA IRNTAKAAWH E