| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0785 |
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| Symbol | aspS |
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| ID | 8708996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 889043 |
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| End bp | 890839 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482886 |
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| Product | aspartate--tRNA ligase |
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| Protein accession | YP_003374003 |
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| Protein GI | 283783249 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0173] Aspartyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CGGCGTATCG CACACATCAT GCCGTTGAAG TGACTGAAGA ATTAGTCGGG
CAAAAAGTAA CCATCGCTGG TTGGGTTGAT CGTCGCCGCG ATCATGGTGG AGTTGCCTTT
GTTGATGTCC GTGATAACAC AGGCTTAGTG CAAGTTGTTA TTTACGATGA AGAAACTGCA
CGACCATTGC GTAGTGAATT CGTTGTGCAA GTGACCGGCG AAGTTCGCTT GCGTCCAGAT
GGCAACGAAA ACGATCATTT AGCAACCGGT AAAATTGAGA TTGTTGCAGA AACTGTTACT
ATTCTCGCAA AGTCAGACGC TTTGCCATTC CAGGTTTCAA CAGCTTTGGA AAACGAGTCC
GAGAACAAGC TTCCAAGCGA AGATGTTCGT TTGAAGTATC GTTACCTTGA TTTGCGTCGC
CCATCTATGC AGCGCAATTT GAAGCTTCGC TCTGATATGG CTAAGGCTGC CCGCCATGCT
TTGGAAGACA TGAACTTTAC TGAAGTTGAA ACACCAACTT TCATTAAGTC AACTCCTGAA
GGTGCTCGCG ACTTCGTTGT TCCAGCACGA TTGGTTCCAG GCTCTTGGTA CGCACTTCCA
CAGTCTCCTC AGCTTCTAAA GCAGTTGCTC ATGGTTTCTG GCGTTGAACG CTACTATCAG
CTTGCTCGTT GCTATCGCGA CGAAGACTTC CGTGCAGATC GTCAGCCTGA GTTCACTCAG
CTTGATATGG AAATGAGCTT TGCAAGTCAG GAAGACGTTA TGGCTATGGC AGAGCGCGTT
ATTGCCGCTA TTTGGAAGGA AGCAGGTCAC GAAATCACTC TTCCTTTGCC TCGTATTACT
TGGCAGGAAG CAATGGATAA GTATGGTTCC GATAAGCCTG ATTTGCGTTT TGGAAACCCA
CTTATTGAGT TAACTGACTA CTTTAAGAAC ACTCCATTCC GCGTGTTCCA AGCTTCATAC
GTTGGCGCTG TGCTCTTTAA GGGCGGTGCT GCAACTCCTC GTCGCCAATT TGACGCTTGG
CAGGATTGGG CTAAGCAGCG TGGAGCTAAG GGATTGGCTT ACGTTGTGTT TGGTGAAGAT
GGCGAGTTAA AGGGTCCTGT TGCTAAGAAT CTTAGTGAAG AAGAGCGCGC AGGTCTTAAG
GAAGCTGTTG GAGCAGAAGA TGGCGATGCA GTGTTCTTCG CAGCAGGTTC TCGCGAGTCT
TCGCAGCTTT TGCTCGGCGC AGTGCGCGTT GAACTTGCTA GCCGCGCAGG ATTGCTTCAC
CCAGATGAGT TTGCTTTCAC TTGGGTTGTT GACTTCCCAC TATTTAAGCG CACTGATGAT
CCAGATGATG ACGACGTTGC CGTTGGCCAC TCAAAGTGGA CTTCTATGCA CCATCCGTTT
ACAATGCCAT CTGCTGATTG GATCGATAAG TTTGATAAAG ATCCAGAGCA CGCTATGAGC
GATTCTTACG ATATCGTGTG CAACGGTAAT GAAATGGGCG GCGGATCCGT TCGTATCCAC
CGCGACGATA TTCAAGATCG TGTGCTTAAT GTTCTTGGAA TCGATAAGGC TGAAGCTGAC
GAAAAGTTCG GCTTCTTGCT TGAAGCTTTC AAGTATGGTG CTCCACCTCA CGCCGGTATT
GCTTTGGGCT GGGATCGTAC TGCTGCAATT TTGGCAGGCG CAAGCTCAAT CCGCGACGTA
ATTGCATTCC CTAAAGCTGG CGGCGGTCGA GATCCTCTAA CCGGCGCTCC TGCTCCAATT
TCTGACGAGC AGCGTGCTGA AACTGGTGTT GATTACGATC CAGAAGAAGA CGAGTAA
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| Protein sequence | MSQTAYRTHH AVEVTEELVG QKVTIAGWVD RRRDHGGVAF VDVRDNTGLV QVVIYDEETA
RPLRSEFVVQ VTGEVRLRPD GNENDHLATG KIEIVAETVT ILAKSDALPF QVSTALENES
ENKLPSEDVR LKYRYLDLRR PSMQRNLKLR SDMAKAARHA LEDMNFTEVE TPTFIKSTPE
GARDFVVPAR LVPGSWYALP QSPQLLKQLL MVSGVERYYQ LARCYRDEDF RADRQPEFTQ
LDMEMSFASQ EDVMAMAERV IAAIWKEAGH EITLPLPRIT WQEAMDKYGS DKPDLRFGNP
LIELTDYFKN TPFRVFQASY VGAVLFKGGA ATPRRQFDAW QDWAKQRGAK GLAYVVFGED
GELKGPVAKN LSEEERAGLK EAVGAEDGDA VFFAAGSRES SQLLLGAVRV ELASRAGLLH
PDEFAFTWVV DFPLFKRTDD PDDDDVAVGH SKWTSMHHPF TMPSADWIDK FDKDPEHAMS
DSYDIVCNGN EMGGGSVRIH RDDIQDRVLN VLGIDKAEAD EKFGFLLEAF KYGAPPHAGI
ALGWDRTAAI LAGASSIRDV IAFPKAGGGR DPLTGAPAPI SDEQRAETGV DYDPEEDE
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