| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0781 |
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| Symbol | ligA |
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| ID | 8709562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 881971 |
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| End bp | 884859 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482882 |
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| Product | DNA ligase (NAD(+)) |
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| Protein accession | YP_003373999 |
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| Protein GI | 283783245 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA ATAGTATTCG CGAAGAGTCA ACAGAGAGCG AACAGTTATC GCTTTTTTAC
GATTTTGACG AGCAAACTAT ATCTCATGAA GCGCCAAAAA ACGAAACTAA TAGCATAAGT
ACAGTTAAAA CAGAGACTGT TACTCAGGCT GATAGCAAAA CTGATAACAA AACTGACATG
CATGAAGCGA ATGAGTGGAA CTCTACAATA GACACCGAAA AGTGGATTGC AAACTTGAAA
CCAACAGACA CTGATGCGTT GGCTCTTGGA AACTTGCAGC CAGCGACGCT TACTATAGAG
CAAGCTGCGA AACTTTGGGC AAAGTTGGCA GCTTGGGCAC AATCTGATCA AATTGCTTAT
TACGTAGAAG ATTCTCCGAC TAGTTCAGAC GCAGCATATG ATGCAAGAAT GCGAGCGCTA
AGCGCTTTAG AAGCTGCCTT CCCAACTTTA GACACACCTC AATCTCCAAC ACATCGCGTA
GGTGGAACTT TTTCTAACGA TTTTACTTCT GTAAAGCATC CGTCTCGAAT GATGAGTTTG
GATGACGTAT TTTCAATTGA AGAATTACAT GATTGGTATA ACAGCGTAAT TCGCGATTTA
CAATGGGATG AGTCTCAACC TCTTCCTATG ACTTGCGAAG TAAAAATTGA TGGTCTTGCT
TTAAATCTTA TTTATCGCAA CGGTACTCTT GAACAAGGTC TTACTAGAGG CGATGGCGTA
ACTGGCGAGG ATATTACATT AAACGTAAGA ACGATTGAAG CAATACCAAC ACAGCTTCAT
TCTGATAATC CTGACGATAT TCCTGAGTTC GTGGAAATTC GTGGCGAAGT TTTTATGAAA
TGGGAAGACT TTAGAAAATT AAATGATGAA CAAGAAAATG CTGGACGAGT TGCTTTTGCA
AACCCTCGTA ACGCTGCAGC TGGCTCTTTG CGCCAAAAAG ACCCACGAAT TACAGCCACG
CGTCGATTAA GCTTTTTTGC ACACGGACTA GGTGAGCTTC GTTGGAAAGA AAATACAAGC
CATAACAATA GTGAAACAAA ATTTAATCAG TCTGACGCAT ATAAGCTCTA TCAACAGTGG
GGAATACCTG TTTCTCCGTA CACAAGAAAA GTCACAAATT TTTCTGAAAT AGAAGAAATG
ATTGACTATT ACGGAAAGCA TAGAGCAAAT ATTTTGCACG CTTTAGACGG CATAGTTGTA
AAAGTTGATG ACAGAGCATT ACAGCATCAA CTAGGAGCTA CTTCTAGAGC TCCACGATGG
GCTATTGCAT ACAAGTATCC TCCTGAAGAA GTTAATACTT ATTTGAAGGA TATTATTGTC
CAGGTTGGAA GAACTGGAAG AGTAACTCCT GTAGCTGTTC TTGAACCTGT TACTGTAGCA
GGATCGACAA TTTCTCGCAC AACTCTTCAT AACGCTTACG AAGTTGAACA TAAAGGTGTG
CTAATTGGCG ATACTGTCGT AGTTCGTAAA GCTGGGGATG TTATTCCAGA ATTAGTCGGA
CCGGTACTTA AAGCTAGGGA AGGGCGAGAA AATGAACTTA GAAAGTTTGT TATGCCAGAA
TACTGCCCAT CTTGTGGAAC TAAGCTAGCT CCTGCAAAAG AGGGAGATAA AGACATTCGT
TGCCCAAATG TAGAAAACTG CCCAGCTCAA CTTACAGAAC GAATAATTCA CTTGGCTTCC
AGACAAGCTT TTGATATTGA AAATTTGGGC GATAACGCTG CGCTAGCTCT TACAAATCCT
GAGGATTGCA GACCTACAAC TGCAGAAGTT TACTGCCCAG ATATGGATAA AATTATAATT
CAGCGAGGCG CAACTCAACA ACCATATATA CCGTCACCAG ATTTAACGCT ACCTGAACCA
CAAACTCCAG TACTTAGAAA TGAAGCTGGA TTATTTAGTA TTACTGCCGA CGATTTGCAA
AATGTAATGG TTTGGAAAGA AATTCCTCTT GTTGAAGAGT GGAAAGAAGT TAGTAAAGAC
GGTAGCTTTA AAAAGCGTAC ACGCAAAATA GGCGGATCTG GTCTTTGGCA TCAAGTTAGA
GCATTTTGGA CTCGCACAAT CGAAGCAAAG TTATCTACAA ATTACGAAGC AGAAGGAACT
TCCGAAAAAA CTACTTCACT AAACGAACAA TGGGATCCTC AATATCCTAA ATTCCAGGTT
CCAATTGACG CTAAAGTAGT ACTTTGGAAA AATAAGCGCA TTACTAGAAA TGCTAAAACT
AGCGACAACG CTAAAGAAAC AATAAATGTG CCATGGTATA CAAGACCTTC TGAAACTACT
CGTAGTATGC TTGAAGAAAT AGCTCAAAAA GGCAAGAATG CAGCACTGTG GCGAGTTTTG
GTTGCTTTAT CTATTCGTAG ACTAGGTCCA CCAACTGCAC GTCTTATAGC GGCAAATTTT
GGATCTTTAG ACAATATTTC CAAAGCATCT ATTGAAGAAC TTACACAAAT TGATGGAGTT
GGTCCTGAAA TTGCGCAAGC AGTATACAAC TGGTTCCAAC AAGCTAAAGA CCCTGCTAAT
TGGCAATTTG AAGTATTAAA ATCGTGGCAA GAAGCAGGTG TAGTAGGGAA AGTTGAAGCA
TCATCTTTCG CTCAAACATT AGTAGGTAAA ACAATAGTTG TTACAGGATC TTTGCAAGGA
TTTACACGGG ACAGCGCAAA AGAAGCTATA GTCTCAAGAG GCGGCAAAGC ATCAGGGTCA
GTAAGCAAGA ACACATATTG CGTTATTCTA GGCGAAAATG CAGGATCCAA GGCAACTAAA
GCGCAAGAAC TTGGCATTCC TATGCTTAAC GAACAACAGT TTAATACTCT TTTAAAAACT
GGGAACTTAG AAGAAATACT ACAAATTGCA AATAATACTG TGCCAAATCT CATTGCTGAG
GAATCATAA
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| Protein sequence | MSENSIREES TESEQLSLFY DFDEQTISHE APKNETNSIS TVKTETVTQA DSKTDNKTDM
HEANEWNSTI DTEKWIANLK PTDTDALALG NLQPATLTIE QAAKLWAKLA AWAQSDQIAY
YVEDSPTSSD AAYDARMRAL SALEAAFPTL DTPQSPTHRV GGTFSNDFTS VKHPSRMMSL
DDVFSIEELH DWYNSVIRDL QWDESQPLPM TCEVKIDGLA LNLIYRNGTL EQGLTRGDGV
TGEDITLNVR TIEAIPTQLH SDNPDDIPEF VEIRGEVFMK WEDFRKLNDE QENAGRVAFA
NPRNAAAGSL RQKDPRITAT RRLSFFAHGL GELRWKENTS HNNSETKFNQ SDAYKLYQQW
GIPVSPYTRK VTNFSEIEEM IDYYGKHRAN ILHALDGIVV KVDDRALQHQ LGATSRAPRW
AIAYKYPPEE VNTYLKDIIV QVGRTGRVTP VAVLEPVTVA GSTISRTTLH NAYEVEHKGV
LIGDTVVVRK AGDVIPELVG PVLKAREGRE NELRKFVMPE YCPSCGTKLA PAKEGDKDIR
CPNVENCPAQ LTERIIHLAS RQAFDIENLG DNAALALTNP EDCRPTTAEV YCPDMDKIII
QRGATQQPYI PSPDLTLPEP QTPVLRNEAG LFSITADDLQ NVMVWKEIPL VEEWKEVSKD
GSFKKRTRKI GGSGLWHQVR AFWTRTIEAK LSTNYEAEGT SEKTTSLNEQ WDPQYPKFQV
PIDAKVVLWK NKRITRNAKT SDNAKETINV PWYTRPSETT RSMLEEIAQK GKNAALWRVL
VALSIRRLGP PTARLIAANF GSLDNISKAS IEELTQIDGV GPEIAQAVYN WFQQAKDPAN
WQFEVLKSWQ EAGVVGKVEA SSFAQTLVGK TIVVTGSLQG FTRDSAKEAI VSRGGKASGS
VSKNTYCVIL GENAGSKATK AQELGIPMLN EQQFNTLLKT GNLEEILQIA NNTVPNLIAE
ES
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