Gene HMPREF0424_0780 details

Gene Information

• Locus tag: HMPREF0424_0780
• ID: 8710066
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 878385
• End bp: 881837
• Gene Length: 3453 bp
• Protein Length: 1150 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 646482881
• Product: tetratricopeptide repeat protein
• Protein accession: YP_003373998
• Protein GI: 283783244

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.516639
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGGATTA TGACTAACAA CATGCAAACT ACTGAAAATT CAGAATCTCA GGAAGATAGT 
ATGTTGCAAC TACAAGAATC TCTTAACTCG TTGTGGTCAG AAGGCAATCC AATAGATATT 
TCGTCGCGCG CTAAAAAGTA CGTTATTAAA GATTTTCCAC AAACAAATAC CAACAATCAA 
TTAGGCTGGG TTCAACTTAA CAAGAAAAAA GAATACACGT CAATTGGATT ATTTAAAGAA 
GACGGAAGAA AATTCCTTCA ACTAGCAGTA GCAGATTCAG AAGGGCGAAT ATTTCTCGGC 
AGCAAACTTA GCTACGAAGA TATTCAAGAC ATGAGACCGC AACTTTCATT TGTAGAAAAA 
AATAATTCTT CACTGAAAGA TTTACACCGT TTTTATGGAA AACAATATAA AAAAACAAAA 
ATTACTCTAA AATGTGCATT TTTGGAAGCG TTTGACGAAA CGTACACCAA ACATACAGAC 
TATGATATGG ATAATATCGT AGAATCCTAT TTAAATGGCG ACGCAACCGT AGAAGATTTT 
CTCGCTTCTT TAGAAAGCAG TAAGTCTAAA AGCGCATTAA AACCAGAACA TCGCTCTAAA 
ACTTTTGCCG GAAAAATAAA CCACTTTTCT AAAACTTTTT CAAAAATTAG AAAAGAAAAC 
GTATTTTGCG TATCAAACGG AGACTTAGTT TTACAACTTT CAGAAGATAA CGGTTTAATT 
AAAATCGGAT CATGGATCTC ACACGGGTTC GGAACTAAAA AAACTTATAC TCTCGAAGAG 
TTACGAACTA AACTTCCAGA AAACTTACGA TGCAATCTTA CATACAGAAA TGCAATAACA 
ATAGCATTCT TTGCAGCATT ATTCATTCCA GACATGCACA AGTCTTTAAC TGGATTTGGT 
TACAGCAATG TACTTCGCAG ACTAGAACAC GAAGCACCTT TAGGAGCAAT ACGAAGAAGT 
GTAGAAGACA TAAAAATAGC GAAAAAAGAG AATTTAAGAG TTTCAGGTTT AGAAGAATAT 
TTCGAAAAAT TAATGCGCTC AACTGGAGCT TTAGAAACAG AACGCAGCCT GGAAGCAGTG 
CATGGTGCAG AACGCCTACA CATGCAAAAA TCTCAGCAAA CAGAAGCAAA CTACTTACTT 
TGGGATGATG CTTTGGAACC AAATGCTGCA CTCAAAGTAC TTAAAATAGA AGGCGCTATT 
AACCGTTTAT ATTCAATTTA TGATTGTCTG CAAATTAACT CCATTATGGG AGGAAAAACT 
TGCGAAAATA CTATAAAAGA AGAGCAGGCA TCACAAATCG ACATGGCAAT GATTAAAGAT 
GTTGCTTTTG CAGCAAGCGG TTCAATAGGT ATGCAATTTT TTGGCAATCC TCTGATGGAC 
GACAAAATAA GACCTATTTT GCACATGTGG AGAAGAGCAA AGCAGGTAAA AAATAACGAT 
AAGTATTTCA ATAAGATAGA TAACGACAGT GAATGGTCCT ATAGGCAGCG TCTTTCTAAT 
CTTATTAGAA GTGTATACTT GCCGTTCCGT TTTGACGCGG AATTCCGATC TAATTTAGAA 
GATGGTAACG TGGCAATAAA CCTTACTACA GCTGGAGCTG CACTTATGCC ATCTGTAGCT 
TACGCTAATG AGGATAAATC TTGGAAAAAT CTGAACGACG ACGATAAAGA AAAACTAGCT 
ACAAACTACA ATCTTCAAGT TGGAATGATA ATGTCTACTC TAGCTTTTGG AGCAAGCGGT 
AAAGTAAAAA ATGTTTCTAT ACGCTTAGAT TCAATAGGCT TAGAAGAGAT GGTTACAGCA 
CAAAACAATG CTATGAACAA TCTTGTAAAT CGTACTCTTA ATGCGCTTAA CGTTATGAAT 
AGTGACGCTG CAAATAATGA TTCATCCAAG CCAAAAGGAG ATCCAAAAGA CGGTGACATT 
CATGGAGACC CGTCTAAATT GCAAGAAATG CAGCAGACTA ATATTAGTAA CGCAAACAAG 
ACAAACAATA ATGTCATATC AATGCATGCG AGCGCAAGCA GCCAAGAATT AAACTCAGAA 
ACAGACACAA ACGCAGATTC TAACGAAAAT CAACTGTCCG AAAACAGCAT GGATAAGTCT 
AAAGAAGAAA ATTCATTTGC AGCTTTTACT ACAGCACCAT CCATACGAGC TCTAACTACA 
GTTACGTTTA GCAGAGACAG ATTTATAAAA CTTATTCACC AAAACGGATT AAATAATCCT 
ATAAAAACAT ACGAAAAATT TAATGCCAAA TTAAACATTG ATTCTCATGG AAAATTAAAT 
ACCATCGAAC CAGATTTTGA TGTTCACAGT AGCCGCTTTT CTCCTCATGG ATCACAAGAA 
GAACCTGAAT TTTCTGACAA AATTTTTACA GCAGATCAGG AAAGCATACT GGGAACACAA 
TACGCACAAG GGCTTTCTAT ACAACGTGAA GATCTTCTGC AACAAGCTGT TGCCGACTTC 
CATCATATTG CTTCAGAACT TATGCCAACA ACTGCACAAA AAGCTCACGA AGCTATGAGT 
ATTATTGAAA GCATTGACGA TCCTGAACTT AACGCTCAAG CAGATTCAAT AACGCGAGCG 
CTAATTGACG AAACAGATTT ACCCAATCTT TCATTTACTA CAGCAAAACG TATAAGAGAT 
ATTCGTACAA AAGCTCACGA ACAGTTTATG AATGGGGACC TTAGCGAGGC TTTAAAAGAG 
TACGAAAATT CTGTAGCACA ATTCGATACT ATGTTTACTA GCAGCGAAGC TGTACCAAGA 
TACTTTAATT CCTACGCTGA GAGAGTAATT TATAATCATC TATTTGCAAC TAAAGAAGAA 
CGAACAAGAC TTATTCCTGA CGGTCTTTTC TACGCGCATA TGGAACTTGC TGATTTACTT 
TCGCAATTAA ACCAACATGA CGAAGCTTTA CGCCATTTAA ATATTATGGT TTCGTACGCT 
CCTACTTACG CTCTTTCTCA TTTAAGATTA GCTGATATAC TTGCGCAAAA AGAGGATTGG 
TCATCTGTTA TTGCAGCTTG CATTAACGCT TTGAATGTGT CTCTCGATAG GGATGACGCT 
GCTTTTGCTT ACTATAAGCT CGCTTATGCG GAATGGATGC AGAATAATTT CCTCATTGCT 
GCATCTTCAT ATAGAATGGC ACAATACTTA GCTCCAGGAA AGATTGAGCC GCTAGAAATG 
GAACTTGATG AGCTTCTTTC TAGAATGAGA TCGCAGTGCA AGCTAATACC GAGCAATATA 
CATGAAGCAC AGATGGCTCT TCTTTCTGAA GACGTACCAG CTTGGCCTGA TATTGAAGCA 
GAAGAGATTA TTGATAAAGC AGCAAAATTA ACTGTGAACG ATGGAATGTT TGTAATTGCA 
AGAACTTTAT GTGTTGCAAA TATTCGAATG ACTTCTAACG AAGATCTAAG TAGCACAGTA 
CAAACACAGT TCTTAAGATC TTTAAACGCT TAA 

 

Protein sequence

MGIMTNNMQT TENSESQEDS MLQLQESLNS LWSEGNPIDI SSRAKKYVIK DFPQTNTNNQ 
LGWVQLNKKK EYTSIGLFKE DGRKFLQLAV ADSEGRIFLG SKLSYEDIQD MRPQLSFVEK 
NNSSLKDLHR FYGKQYKKTK ITLKCAFLEA FDETYTKHTD YDMDNIVESY LNGDATVEDF 
LASLESSKSK SALKPEHRSK TFAGKINHFS KTFSKIRKEN VFCVSNGDLV LQLSEDNGLI 
KIGSWISHGF GTKKTYTLEE LRTKLPENLR CNLTYRNAIT IAFFAALFIP DMHKSLTGFG 
YSNVLRRLEH EAPLGAIRRS VEDIKIAKKE NLRVSGLEEY FEKLMRSTGA LETERSLEAV 
HGAERLHMQK SQQTEANYLL WDDALEPNAA LKVLKIEGAI NRLYSIYDCL QINSIMGGKT 
CENTIKEEQA SQIDMAMIKD VAFAASGSIG MQFFGNPLMD DKIRPILHMW RRAKQVKNND 
KYFNKIDNDS EWSYRQRLSN LIRSVYLPFR FDAEFRSNLE DGNVAINLTT AGAALMPSVA 
YANEDKSWKN LNDDDKEKLA TNYNLQVGMI MSTLAFGASG KVKNVSIRLD SIGLEEMVTA 
QNNAMNNLVN RTLNALNVMN SDAANNDSSK PKGDPKDGDI HGDPSKLQEM QQTNISNANK 
TNNNVISMHA SASSQELNSE TDTNADSNEN QLSENSMDKS KEENSFAAFT TAPSIRALTT 
VTFSRDRFIK LIHQNGLNNP IKTYEKFNAK LNIDSHGKLN TIEPDFDVHS SRFSPHGSQE 
EPEFSDKIFT ADQESILGTQ YAQGLSIQRE DLLQQAVADF HHIASELMPT TAQKAHEAMS 
IIESIDDPEL NAQADSITRA LIDETDLPNL SFTTAKRIRD IRTKAHEQFM NGDLSEALKE 
YENSVAQFDT MFTSSEAVPR YFNSYAERVI YNHLFATKEE RTRLIPDGLF YAHMELADLL 
SQLNQHDEAL RHLNIMVSYA PTYALSHLRL ADILAQKEDW SSVIAACINA LNVSLDRDDA 
AFAYYKLAYA EWMQNNFLIA ASSYRMAQYL APGKIEPLEM ELDELLSRMR SQCKLIPSNI 
HEAQMALLSE DVPAWPDIEA EEIIDKAAKL TVNDGMFVIA RTLCVANIRM TSNEDLSSTV 
QTQFLRSLNA