Gene HMPREF0424_0764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0764 
SymbolcasE 
ID8709805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp867351 
End bp867998 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content36% 
IMG OID646482866 
ProductCRISPR system CASCADE complex protein CasE 
Protein accessionYP_003373988 
Protein GI283783234 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0680361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTATT TAAGCAGAGT AGAAATTGAT TATAAAAAGC CTTCATCGTT GAGAGATCTT 
AAATCTGTTG GTGCTTTTCA TAATTGGGTT GAGCAAAGTT TTCCTGACGA ATGGGAGAAT 
CATGAAAGAA GCAGAAAGCT ATGGAGAGTT GATGTTTTGC ATGGAAAACA TTACTTGCTT 
ATAGTGAGTG ATTCTAAACC AGATTTGCAA CGTCTAGAGA TGTATGGTGT TTCCGGAACA 
GCGTCAAGTA AAACTTATGA TAAGTTTTTA GGCTCACTGA TGAATGGCAT GAGAATGCAA 
TTTCGTGTGA CACTTAACCC TGTTGTTTCT ATTTCTGATA ATGCTGAAAC TCACACTGCT 
AGAGGTAGGG TAGTACCACA TGTTACTTAT GATCAGCAGA TGAATTTTTT GCTTAATCGC 
GCGCAAAAAT TAGGTTTTTC GTTGAACGAA AATGAATTCG CCATTGTTGA ACGCGGATAT 
AGCTTATTTA CTAAGTCAGA AAAACCTATT CGATTAAGTA AAGCTGTTTA TCAAGGTATT 
TTAACAATTA GTGATGCAGA CATCATGCGT AAAACACTGC TAGAAGGAAT TGGTAAAAAG 
AAAGCATATG GCTTTGGAAT GATGACAGTA ATTCCTTTAG ACAATTAA
 
Protein sequence
MSYLSRVEID YKKPSSLRDL KSVGAFHNWV EQSFPDEWEN HERSRKLWRV DVLHGKHYLL 
IVSDSKPDLQ RLEMYGVSGT ASSKTYDKFL GSLMNGMRMQ FRVTLNPVVS ISDNAETHTA 
RGRVVPHVTY DQQMNFLLNR AQKLGFSLNE NEFAIVERGY SLFTKSEKPI RLSKAVYQGI 
LTISDADIMR KTLLEGIGKK KAYGFGMMTV IPLDN