Gene HMPREF0424_0761 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0761 
SymbolcasB 
ID8709029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp864626 
End bp865240 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content35% 
IMG OID646482863 
ProductCRISPR system CASCADE complex protein CasB 
Protein accessionYP_003373985 
Protein GI283783231 
COG category 
COG ID 
TIGRFAM ID[TIGR02548] CRISPR system CASCADE complex protein CasB/Cse2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0427302 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAA ATCAAAACAA ATCTGTTGAA GTATCTAATG CTGTTAGAAA AATTATCAAT 
CAGTTTATAG AAATTGCAGA TACTTCGTCA TATAGAGCTA TGCTTGCTCA ACTGCGTCAC 
ACAATTGGTA AGCCATTAAG TCAGTCTGTA GAAATATGGC CGTGGATATT AAACAATGTG 
CCAGAAAGCT TCATGGATAA ATATGGCGAG GTTAGCTACC AATTGCGAGC TGTTATAAAC 
ACTTTGCAAA TATATGCGTT ATATGAACAA GGTGTTGCAG AAAAATCAAG TTATAAAGAT 
TTGAACAAAT CTGAAGATTC AGTAAATGAA AAATCTTATA ACAATATGGG AACAGCTTTA 
AGAACATTAA GAAGTGATGA AGGCGTACGT GGAGCTATGG ATAGGCGCTT TAGTGTTATG 
ATCACTGCAA GCGATTACGA AAGTTTTTAC TACTACCTTC GTCAACTAGT TCGACTACTA 
AAAAGCAGAA CAAAAGAAAA TCAACAAACG ATTGATTATT CTAAACTTGC GCGAGATTTG 
TATTTGCTTC AGTTTGAAGA TTCAGAAAAA GTAAGACTTT CCTGGGCACA AGAATATTAT 
CGCTTCACCA AGTAG
 
Protein sequence
MAENQNKSVE VSNAVRKIIN QFIEIADTSS YRAMLAQLRH TIGKPLSQSV EIWPWILNNV 
PESFMDKYGE VSYQLRAVIN TLQIYALYEQ GVAEKSSYKD LNKSEDSVNE KSYNNMGTAL 
RTLRSDEGVR GAMDRRFSVM ITASDYESFY YYLRQLVRLL KSRTKENQQT IDYSKLARDL 
YLLQFEDSEK VRLSWAQEYY RFTK