| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0750 |
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| Symbol | |
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| ID | 8709765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 847338 |
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| End bp | 851432 |
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| Gene Length | 4095 bp |
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| Protein Length | 1364 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 646482855 |
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| Product | Eco57I restriction endonuclease |
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| Protein accession | YP_003373977 |
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| Protein GI | 283783223 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000117598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAACAAG TAGACAATCT TGAATTGCTA GATAATCTTA TTTTTGGTAG AGTTACACCT
CACATTTATG CTTTCCGAAC AGGCACAATA CCAAACTATC TCAAAGTTGG TGATACTTAT
CGGCCAGTCA GTGTTCGTTT AAAGGAATGG GAACAAAAGT TCCCTGACCT AATCAAAAAA
TATGAGCATA AAGCAACAGT TTCGGATAAT GTATATTTTC GCGATTATGC TGTACATGAT
TATTTAGAAA ATTCGCTTGG CAAAAAACAC CTTGAACCAG AAGATTTATC TACAAATAAT
GTTTACTATA GTAGGGAATT TTTTAAAGAT GTTAATACTT CTGAACTAGA TGAAGCTATT
AACGATATAT GCGAGCAATA TAAATTAAAA AACTCTACAT ATGCCTACTA TGACTCCAAT
AAACGACTGC CTGTTACGAT ACATTATGAG CGCGGCACAA AGTGGACACT ACGCCCAAAT
CAACGAGAAG CAGTTGACAA TTTTATAAAT GCAGTGAACT TGGGGCGCAC AAATCTTTTG
ATGTATGCTG TTATGCGATT TGGCAAATCG TTCACGTCGC TTGCATGCGC CAAAGCCATA
AACGCAAAGA CTGTGCTTAT TGTTTCTGCT AAAGCAGACG TTCGTGAAGA ATGGAAGAAG
AACGTAGAAC AGCCAGGTAA TTTTGAAGGC TATAACTTTT TAAGTTCAAA AGAATTATTA
GAGAACGATA ACGCAATTTT AGATATTCAT GCCAAAAATG AAACGGCAGT CATTTTCCTA
ACACTACAAG ACTTACAAGG CACTGAAATT AAAGCAAAGC ATGCACAAGT CTTTGAGAAT
AAAATTGACT TATTAATTGT TGATGAAACA CATTTTGGCG CTCGTGCTCA AAGTTATGGC
GAGATTTTGC GTAATATGCA AACAGACGAG AAAAAAGACC TAAAAGAAAA TATTAAGTTT
CTTGATAAAC AGGAAGATGA TCAAATAGAT CTTGAAGATG CAGATAAACA AATCAAGGAA
TTAAAAGCTA AAGTTCGATT ACATCTCTCT GGTACTCCTT ATCGAATATT AATGGGCTCA
GAATTTGAAC CGGAAGATAT TATTTCTTTT GTTCAATTTA CTGATATTGC TCGAGAACAG
GCAGCTTGGG ATGCTGAAAA CTTAGATAAA GATGATGTTG AGGAATGGGA TAACCCTTAT
TTTGGTTTTC CTCAGATGAT TCGTTTTGCG TTCCACCCAA GCAAGCGAGC TATAGAAAAA
ATGAACGAAC TGAAAAAGCA TGGAGTTAGT CTTGCTTTAT CTGCTCTTTT TAAGCCTCAA
TCCATTAAGA AAGACACAAA AACAAATAGG CATCAAAAAT TTGAACATGA GGAGGAAATT
TTTGACCTTC TAAAAATTAT CGATGGTACT TCTAGTGACT CAAAACTTTT AGGATTTTTA
GACTACGATA AAATTAAGCA AGGTCAAATG TGCAGGCATA TTGTAATGGT TTTGCCATAT
TGTGCTTCTT GCGATGCAAT GGAAAAGATT ATTAAAGATC GTGCTTTAGA ATTTAAGAAT
CTTGGTGAGT ATGAGATTTT AAATATTTCA GGCGTAGATG CACAACATCA CTTCCATACG
CCAACAGATA TTAAAAATCG TATTGCAAAA CTTGAATCAG AAGGTAAAAA GACACTCACT
TTAACAGTAA ATAGAATGCT TACGGGCTCA ACTGTTGAGC AATGGGATAC GATGATTTAT
CTGAAAGATA CAGCGAGTCC GCAAGAATAC GATCAAGCGA TATTTCGCTT ACAAAATCAA
TATGTCCGTG AACTAAGTGA CGGCACAAAA GTTATCAAAG AGTGCCTAAA ACCGCAAACG
CTACTCGTAG ATTTTGATCC ACATCGTCTT TTTACTATGC AGGAGCAAAA ATCTTTAATT
TACAATGCTA ACACTGAAAA GAATGGTAAT TCATTGCTTG ACAAGCGTAT TGCTGACGAG
CTTCGTATAT CGCCAGTTAT TACAATGAAT CATAACCGCC TAGAACAGGT GCAAGCTACT
GATATCTTAA AAGAGGTTAG TCATTACAAC AATTCTCGTT CAATTAGCGA CGAGGTAATA
GATTTACCGA TAGATTTATC AATCCTAAAT AACGAACATA TGCGGTCTGT AATTGAAGCA
CAAAATCCAT TTGGATCTAA GACAGGCTTA ACTCTGGAAG CCCATGCAAG TGAAACAGAT
GGCCAGGATT TTGATGTTAA TGATGATACA GATGAAACAT TGGATGATCA TAATGAGGAC
ATAGAGCCAC ATAAACAACC ATCTTTCACA GCTATAACTG ATGATAAAGA AATCAAAGAT
TTAGAAAACA GGATACGCAC ATATTATCAG CGTATCCTCT TCTTCTCATT CCTTTGTCCA
GAATCAGTAA AGTCATTAGA TGACATTTTA GAAACATTGC ATAACGGTAA AAATGATCGA
CTCGCTAAAA ACCTAGGTAT CAATACGGAT GATATCGAGG TTTTGCGAAA TTCACTCAAT
GCTTTTAAGC TCAGTGCTTT AGATTATAAA ATCCAAAATA TATCTACACT TGCCACTGAC
GAAAACTTAA AGCCCCTTGA GCGTGCAGTA ACTTCACTTG CTAAATTTAG TCGTATGTCT
ACTTCTGAAA TCATAACTCC GATAAAAGTA GCTGATGAAA TGGTGGCGAT GCTTTCCGAA
GACCAATTGC GCAATATCAT TAAATCAGGT GAAAAATTAC TTGATATTGC ATCAAAGGCA
GGCGAATATA CAGTAGCGCT CGTAAAACGT CTACAGGCAT TAGGTTTTTC GCTTGACGAA
ATAAGAAACA GTATCTACGC TATTCCTACT TCAAGCGTTG CTTATGAGTT CACAAGACAT
TTCTACGAAA TACTTGGACT AAATACCGCT TGTATTGCTA AGAACTTTAC AAGTTACAAA
CTTCTCGATA TTAAAAACGA TAAAGAGGAG GTGGACTATA ATCGAATAAC TGAACTTCTC
AGTCAGAAGA AAGATTTTGA TAAAATTACG CTGACAGATA AAATTCAAGG GGGTGAAAAA
GTGAAATTCG GAGCAATCGT AGGAAATCCG CCGTATCAGG CTTCAGCGCA AGGTACAAGC
TCAAGCGATG ATCCAATATA TCATATGTTT CTAGAAATAT CGCATCATAT TGGGAAAATA
GTTATTTTAA TTACTCCAGC AAGATTTTTG TTTAATGCAG GAAAAACTCC ATCAGAATGG
AATAAAAAAA TGTTAAACGA TACGCATTTG AGGGTTCCAT TTTTCGAAAA TGACAGTACA
AAAATATTTA AGGATATACT TATCCCTGGC GGAATTGCTA TAACTTATAG AGATTCAAGA
GTGGAATTTG GTAAAATAGG TAAATTTGTT AGCTATCCTA AGTTAAATAT AATTCGAAAC
AAAGTTTGGG AAAAAGAGCA TGATAGCATA AGGTCTATAA TTTATAGCCA AAATAGATTT
AATTTAGATT TATTATATCG TGATTACCCC GAATATGCGT CAATTATTGG CAGCAATGGC
AGGGATAAGA GATTTAGACA GATAATAATG GAAAGGTTGG ATGTTTTTAC GAAAGAAAAA
ACTGAAGATA GCGATATTAG GGTATTAGGT TTAATAAAAC GATCTAGAGA ATATAGATAT
ATTTCAAAGA AATATGTAGA AGATGAGATT TGGATTGATA AATATAAAAT ATTTGTTCCA
TTTTCTAATG GAGCTTCTGG AACTCTAGGA GATAAGCCTG CAAGAATGAT TAGTAAGCCT
GTACTTGGAC TTCCTGGAGA TGGGATAACT CAAACATTTA TAGGTTTTGG CGCATTTGAT
AGTCAATTTG AGGCAGAATC ATTACTTAAA TATATAAAGA CTAAGTTTTG TAGAATTTTA
TTAGCAATAT TAAAAGTAAC TCAGGGTAAT AAATCTGAAA CATGGGAATA TGTACCAATG
CAAGACTTCA CATGCGCATC CGACATCGAC TGGTCAAAAT CCATCGATGA TATCGATCAA
CAACTTTACC GCAAGTATGG TCTTAATGAT GAAGAAATTG CCTTTATAGA AGAAAAAGTA
CAGCGTATGG AATAG
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| Protein sequence | MEQVDNLELL DNLIFGRVTP HIYAFRTGTI PNYLKVGDTY RPVSVRLKEW EQKFPDLIKK
YEHKATVSDN VYFRDYAVHD YLENSLGKKH LEPEDLSTNN VYYSREFFKD VNTSELDEAI
NDICEQYKLK NSTYAYYDSN KRLPVTIHYE RGTKWTLRPN QREAVDNFIN AVNLGRTNLL
MYAVMRFGKS FTSLACAKAI NAKTVLIVSA KADVREEWKK NVEQPGNFEG YNFLSSKELL
ENDNAILDIH AKNETAVIFL TLQDLQGTEI KAKHAQVFEN KIDLLIVDET HFGARAQSYG
EILRNMQTDE KKDLKENIKF LDKQEDDQID LEDADKQIKE LKAKVRLHLS GTPYRILMGS
EFEPEDIISF VQFTDIAREQ AAWDAENLDK DDVEEWDNPY FGFPQMIRFA FHPSKRAIEK
MNELKKHGVS LALSALFKPQ SIKKDTKTNR HQKFEHEEEI FDLLKIIDGT SSDSKLLGFL
DYDKIKQGQM CRHIVMVLPY CASCDAMEKI IKDRALEFKN LGEYEILNIS GVDAQHHFHT
PTDIKNRIAK LESEGKKTLT LTVNRMLTGS TVEQWDTMIY LKDTASPQEY DQAIFRLQNQ
YVRELSDGTK VIKECLKPQT LLVDFDPHRL FTMQEQKSLI YNANTEKNGN SLLDKRIADE
LRISPVITMN HNRLEQVQAT DILKEVSHYN NSRSISDEVI DLPIDLSILN NEHMRSVIEA
QNPFGSKTGL TLEAHASETD GQDFDVNDDT DETLDDHNED IEPHKQPSFT AITDDKEIKD
LENRIRTYYQ RILFFSFLCP ESVKSLDDIL ETLHNGKNDR LAKNLGINTD DIEVLRNSLN
AFKLSALDYK IQNISTLATD ENLKPLERAV TSLAKFSRMS TSEIITPIKV ADEMVAMLSE
DQLRNIIKSG EKLLDIASKA GEYTVALVKR LQALGFSLDE IRNSIYAIPT SSVAYEFTRH
FYEILGLNTA CIAKNFTSYK LLDIKNDKEE VDYNRITELL SQKKDFDKIT LTDKIQGGEK
VKFGAIVGNP PYQASAQGTS SSDDPIYHMF LEISHHIGKI VILITPARFL FNAGKTPSEW
NKKMLNDTHL RVPFFENDST KIFKDILIPG GIAITYRDSR VEFGKIGKFV SYPKLNIIRN
KVWEKEHDSI RSIIYSQNRF NLDLLYRDYP EYASIIGSNG RDKRFRQIIM ERLDVFTKEK
TEDSDIRVLG LIKRSREYRY ISKKYVEDEI WIDKYKIFVP FSNGASGTLG DKPARMISKP
VLGLPGDGIT QTFIGFGAFD SQFEAESLLK YIKTKFCRIL LAILKVTQGN KSETWEYVPM
QDFTCASDID WSKSIDDIDQ QLYRKYGLND EEIAFIEEKV QRME
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