| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0690 |
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| Symbol | |
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| ID | 8709331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 779430 |
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| End bp | 780536 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 646482795 |
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| Product | polyprenyl synthetase |
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| Protein accession | YP_003373917 |
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| Protein GI | 283783163 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAT TTATAGGCAA CAATTACAGT CTTAACGATA TTGAATCTAG AATTACTTTT
TTAATTTCTC AGCAATTTAA TACGGGATTA GAAAATAATC TTTCATCCAC ATGTGCGCAA
ATACTACAGC AAGTAATAAA GCAAGCTATT GTTTCAAGCG AAGGCGGAAA ACGTCTTAGA
GCTCTTCTTA CGATTTCAGC ATTTTACGCT GCATCAAAAG AAACCAATAT TCAAAAAATC
CATGAACAGT CTGTATTTGA CATAGCTTGT GCTCTAGAAG TATTTCAAAC AGCTGCATTA
ATTCATGATG ATATTATTGA CGAATCTTAT TTAAGACGTG GAAAGCCTAG TGCGTATTGT
GCATTAAGTA AAGTTTGCAA TAATAAGCAT ATTGGCACAG GCTTAGGTTT AATGCTGGGA
GATCTACTTG CCACAGAAAG TTTCGATATT GCAAGAAATC GTGCGAAGAA TTTTACTTAT
GGCGAGGAAT TGTTAGCAGC ATTTGCGTCT ATGCAAAGAA ATGTTGGTAT TGGTCAAGTA
TTGGATTTGT CAATAGAAAT GATGCAACTA GATAATCCAA TACAACTTGC GGAATCATCT
TTGAATGTTT TTAGATGGAA AACAGCCAGT TACACTACTG TTGCTCCATT AACTCTCGGC
TTTCTTGCAG CAAATATGCA ACCAACTGAA GCATACAATC TTGCTAATTC TATTGGCAAT
TCGTTAGGTG TTGCTTTCCA AATTGCTGAT GATTTGCTTG ATATTGTTTC AGATAGCAAG
ATTACAGGTA AGCCTATTGG CGGTGATATT AGAGAAGGTA AGCGTGCGGT TCTTCTTGCA
GATGCTTTGC AATACGGAAA CGATAACGAA AGAGAAATAC TATTAAAAGC TTACACGAGT
AGTACTCGAA GCGAAGATGA TGTAAATAAA ATAATACAGA TTTACCATAC TTCTGGTGCT
ATTGAAAAAT CAAAAAAGCG AATTGAGAAT CTGTGGAATG ATTCACAACA AGCAATCGAA
TCAAGTACAT TGAGCGACAG TGGAAAAGCT ATTTTGCATG AAATTAGCAA ACGATTTATA
CCTGAAGCAT GGCGTAATGT ACAATAA
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| Protein sequence | MSTFIGNNYS LNDIESRITF LISQQFNTGL ENNLSSTCAQ ILQQVIKQAI VSSEGGKRLR
ALLTISAFYA ASKETNIQKI HEQSVFDIAC ALEVFQTAAL IHDDIIDESY LRRGKPSAYC
ALSKVCNNKH IGTGLGLMLG DLLATESFDI ARNRAKNFTY GEELLAAFAS MQRNVGIGQV
LDLSIEMMQL DNPIQLAESS LNVFRWKTAS YTTVAPLTLG FLAANMQPTE AYNLANSIGN
SLGVAFQIAD DLLDIVSDSK ITGKPIGGDI REGKRAVLLA DALQYGNDNE REILLKAYTS
STRSEDDVNK IIQIYHTSGA IEKSKKRIEN LWNDSQQAIE SSTLSDSGKA ILHEISKRFI
PEAWRNVQ
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