| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0689 |
|---|
| Symbol | |
|---|
| ID | 8709935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 776942 |
|---|
| End bp | 779332 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646482794 |
|---|
| Product | kinase domain protein |
|---|
| Protein accession | YP_003373916 |
|---|
| Protein GI | 283783162 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAAG CTACGCAGGC GCAGCCAGGT ATGCGCATTG AAAATCGCTA TCGCATTGTG
CGCAAAATAG CTCAGGGTGG CATGGCTACT GTGTATCAAG CAGAAGATGA ACGCCTTGAT
AGACCTGTAG CAATTAAAAT CATGCACACT CAACTTGCTC AAGGGGTGCA TCGCCAGCAA
TTTATTGCTA GATTCCGCAG AGAAGCAACT TCTGCTGCAG CAATTGCAAA TCCACATATT
GTACAAGTTT ATGATACAGG CGAATATGAC GGGCTCGATT ATCTCGTAAT GGAATATGTT
CATGGCGTTA ATTTGCGTTA TGAAATGAAT ATGCAAGGCA CATTCAGTGT GCGAGATACG
CTGCGTCTAC TTGCAGAAAC TTTGGATGGT CTCGCTTCTG CACATAATGC TGGAGTTGTA
CATAGAGATA TTAAGCCGGA AAATATTTTA ATTAACGATC GAGGTCATGT TCAAATTACT
GATTTCGGTT TAGCTAGAGC AATTTCGCAA GCAACACTAT CTTCTACAGG ATTACTTCTT
GGCACAGCAG CTTATCTTGC TCCTGAACTT ATTGAGCATA ATCTTGCAAC TCCTCAAGGT
GATTTGTATT CAGCAGGCAT GATGGCTTGG GAAATGCTTG CAGGAAGAGT GCCTTTTACT
GCAGATAATC CTGTTACGCT TGTTTTCAAG CATGTGCATG AAAACACTCC TTCAATTGCT
ACAGCTTGCC CTGGAATTAG CGAAAAAGTT GCACAATTCA TAGCAAACCT CACTGCTCGC
GACATGAACG AACGACCTAA AGATGCAAGT GAAGCATTAG CAAAATTACG TGCACTTTCT
ACACAATTAA ACTCTGAAGA TTGGCAATAC AAAGCAGAAG AACCACAAGA GTTTTCAGAA
GAAACAGACT TTTCTCCTAT TAATAATTTG CTTGTTTCCC CTGAAGCAAA TTATTCGGAC
AAATTGAATC CTAATAATGA CTCAGATGCT ACACGAGCAA TAAATACTTC AGGCTCTAAT
TTTTCTGCTA ATTCCAACTC TTTATTGCAA AATGCTACAG ACGAAACTGT TGCAATACCT
AGAAATAATT CTGTAAGTGA ACTCGATTCA CACAAAAATA ATGATTTACA TAATCCTGAA
GTCAATAATG TAGCAATAGA CAATTCACTA GCGAAGTCCG ACAGTGCTTT CGATGCGAAT
AATCTTCAAA AAACACAAGC TATGCAATGG AGTGCTGCTA ATGCAAAAGA TGTGTCATAC
AATTCGCAAG ATAATTCTTT AGAAGAATTT GACGATAGCA ATATGCCAAC AATTGCTATT
AGCTCTCGCA ATTTTAACAA CAACTTAAAT GCAGCAAAAC CGTTTGGCAT GTCAGATAAG
GAAAAAAACT TAGGAAACAA GCCTAATCGT TCTTCTAAAA AGCGTGTTTT CCTTATTGCA
GGTTTAAGCA CAGCTGGAGT ATTAGCAATT GCTGCTATTG GTGGTTTTTG GTATTTCTTA
GGTCCTGGCA GTTATTGGAC GCTGCCTAAG CCCGACGACC TTCAATGCAA AAATTATGCA
TCTTGCAAAA TAACTGATGT CAATTGGCAA CAATATGAGC ACACGCTTAA AATTGCTGGA
ATTCCTTACA AAGTTTCAAA AGATTATAGT GACGATGTGC CAGAAGGAAA AGTAGTTTCA
ACAAATCCTG ATGTCGTCGG CAGCCATATT CAAAAGCACA ATAATAGCAC TCTTAATGTT
GTGATTTCGC GTGGAATTCG TAAGGCTACA ATCCCGGACG ATATTACAGA TCCAAAGACT
TACAATGGCA AAAATCCTTT GAAAACATTG CGTAAAGCAG GATTTACTAA CATTGTTCAC
GATAAGTCAG GAGACACGTA TTCTATAGAC ATACCAGCTG GCAGCTTAAT TGATATTAAC
CCTAAACCTG GCACACGCAT GAACCATAAC GAAGAAGTAA GTGTTTTACT TTCCAAGGGA
CCTAAGCCTG TGCAAATGCC AGATATTGTT GGGAAAACAA AGAGTGAAGC TGACTCAGCT
TTAACTGACG CTAAGCTGGA TGTAAAGTAC GAAGAAGAAA ATAGCGATAC TGTAGCAAAG
GGTAAGATTA TCCGCGCTTC CGTTGAAGCT GGTTCTGACT TACATTGGGG CGATAGTGTT
AAAGTTGTTG TTTCTAAAGG TCCAAAAACT GTTACATTGC CAAACGTTTG CGGAAAGAAC
AGTGATGAAG CTAAAAGGAT TATTGAAAAT CTAGGACTGA AAGTTCGTAT TTCTGCTCCA
CTTGGTGATT TAATGCACGT AGTGCGCTTC CAATCCCCTG GAGCTGGAAG TGAAGTACCA
TTGAAGGATT CTAATGGAAA TCCTTCTATT ATCACTCTTA CAGTAATATA A
|
|---|
| Protein sequence | MDEATQAQPG MRIENRYRIV RKIAQGGMAT VYQAEDERLD RPVAIKIMHT QLAQGVHRQQ
FIARFRREAT SAAAIANPHI VQVYDTGEYD GLDYLVMEYV HGVNLRYEMN MQGTFSVRDT
LRLLAETLDG LASAHNAGVV HRDIKPENIL INDRGHVQIT DFGLARAISQ ATLSSTGLLL
GTAAYLAPEL IEHNLATPQG DLYSAGMMAW EMLAGRVPFT ADNPVTLVFK HVHENTPSIA
TACPGISEKV AQFIANLTAR DMNERPKDAS EALAKLRALS TQLNSEDWQY KAEEPQEFSE
ETDFSPINNL LVSPEANYSD KLNPNNDSDA TRAINTSGSN FSANSNSLLQ NATDETVAIP
RNNSVSELDS HKNNDLHNPE VNNVAIDNSL AKSDSAFDAN NLQKTQAMQW SAANAKDVSY
NSQDNSLEEF DDSNMPTIAI SSRNFNNNLN AAKPFGMSDK EKNLGNKPNR SSKKRVFLIA
GLSTAGVLAI AAIGGFWYFL GPGSYWTLPK PDDLQCKNYA SCKITDVNWQ QYEHTLKIAG
IPYKVSKDYS DDVPEGKVVS TNPDVVGSHI QKHNNSTLNV VISRGIRKAT IPDDITDPKT
YNGKNPLKTL RKAGFTNIVH DKSGDTYSID IPAGSLIDIN PKPGTRMNHN EEVSVLLSKG
PKPVQMPDIV GKTKSEADSA LTDAKLDVKY EEENSDTVAK GKIIRASVEA GSDLHWGDSV
KVVVSKGPKT VTLPNVCGKN SDEAKRIIEN LGLKVRISAP LGDLMHVVRF QSPGAGSEVP
LKDSNGNPSI ITLTVI
|
|---|
| |