| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0658 |
|---|
| Symbol | |
|---|
| ID | 8709535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 742169 |
|---|
| End bp | 742906 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 646482764 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_003373888 |
|---|
| Protein GI | 283783134 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC AAATAGAAGA AAACTATGAG ACTAAAGATA ACTCTTACTG CGTTACTCTA
GAACATATTG GCGTGACTTT TAAAAATAAC GCTAAAATAT TACGAGATAT AAATCTAAAT
ATTAAAAAAG GCGAATTCGT ATCTCTAATA GGACGCTCAG GATGCGGAAA AACCACTCTT
CTTAAAGTTA TTTCAGGATT AATCAAACCT GATTCTGGAA CAATAAACGT CACACAACAT
CAAGCAATAG GTTTCCAAGA TGCAAGATTA ATACCATGGC TAACAGTAAG TAAGAACGTA
GTTTTCGGCA TGCAAGGAAA CAAATCAGAA CTAAAATCTA TTGCAGAAAA AGCTCTTAAC
GATATGCAAC TTAATAATTA TGGTTCGAAA TGGCCATCAG AACTTTCAGG TGGTCAAGCC
CAACGAGTCT CATTAGCTAG AGCTTTAGTT CATAATCCTG AATTACTACT TTTAGACGAG
CCTTTCGGAG CATTAGACGC TTTAACTCGT TTAGACATGC AAGATTTGCT TGATAATCTA
AGGCAAAAAC ATGGCTGGAC CACGATAATG GTCACGCACG ATATTTCCGA AGCAGTAAGA
CTTTCTGACA GAATTCTTAT GATCAAAGAC GGAATTATTG AGAAAAACTG GAATATTGAT
CGAAGCCAAC TTGATGCACA AAAGCGTCCA AATAATCACG TTGAAATAGA AGACGAACTA
CGCATGGCAT TGCAATAA
|
|---|
| Protein sequence | MNTQIEENYE TKDNSYCVTL EHIGVTFKNN AKILRDINLN IKKGEFVSLI GRSGCGKTTL
LKVISGLIKP DSGTINVTQH QAIGFQDARL IPWLTVSKNV VFGMQGNKSE LKSIAEKALN
DMQLNNYGSK WPSELSGGQA QRVSLARALV HNPELLLLDE PFGALDALTR LDMQDLLDNL
RQKHGWTTIM VTHDISEAVR LSDRILMIKD GIIEKNWNID RSQLDAQKRP NNHVEIEDEL
RMALQ
|
|---|
| |