| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0645 |
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| Symbol | |
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| ID | 8709682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 721736 |
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| End bp | 724285 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646482751 |
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| Product | histidine kinase |
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| Protein accession | YP_003373875 |
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| Protein GI | 283783121 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.386333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAT CTCACACGTT TAACAGTTGC ATACAACGCT TACGCACTGA ACTTACGCTA
AACGATATAT TGTGGGGTAT TATTCCGTTT ATTCTTTTTA TGCTTTCAAG CGATCGCTAC
GTTATAAGCA ACGTTGATGG CTTTTTGACT CAAGGTTCGC TTATTACAGT AACGCTTATC
AATATTGTTG TTGCATTACT ACTTTCAGTC CGAAAACTAT GGCCTGAACA ATCGGCTACT
ATTTTTATTG TTATTTGCAT TGTGCAAGTA GCATTTGGCT CTACTCAACT TTTCGCTGAT
TTCTTTGGTT TCGTGCTACT TGTTAATGCT ATTGCGCGCG GAAATCCAGA ACATTCAAAA
GCTTTTGTTA TTGCAGCTTA CGTAACAACA GTATTATCTT GCGCAATAAT ATCGTGGAAT
ATCGTAATGG GGCCAATATA TGGCAACAAT CATTCAAAAG CTAGTTATAC TTGTAGTGTA
CAAAATATAA ATAGTAGTAA CATAAAAAAT TGCGTTTCAA ATATACTTAA TTTTGCAATT
CCTTCAATAA TTTTTGCGAT TATTACTACC ACTATTACGG TTATTATTGG CTACTGGCAA
CGCACTCACG TACATACTAT TCAACTTTTA CAAGATCACA ATAATGCTAT TCGCGCATAC
CGCAAAAAAG CTCAGCATAT TGCTGTTACT GCAGAACGCG CAAGAATTGC CAGAGATATG
CACGATATTG TTGCTCACAC GCTTTCTATT ATTATTGTGC AAGCAGATGG TGGTCGTTAT
GCAGCAACCA AAGATATTTC GCTTGCTAAA AAAACAATGC ATATTATTAA AAACGAAGCC
GAGCGAGCCG TTCACGATAT GCGCCGACTT CTAGAAGCTT TAACAGACGC TCCATCGGGT
CAATTAGACT TCAATCACGT GCCTTCTCTT ATTGAGCAAG CAAAAATTGC ATCTCCTAAA
AATATTTTTT GGCACACTGT TGATGGCATA AATTCTCAAA ATAGGCTTAA CGCGGACGCA
CAAACCGTTG CATACCGCGT TGTTCAGGAG TCTCTTACTA ATATTCGAAA GCATGCAGGA
GATGGCATTA AAATAAACAT TCACGAACAG TGGAAGAACC AAGGCTTAAC ACTAAAAATT
ACAAATGAAA TAAACAAGCT AGAAGCTAAT CAAGAGCAAA ATAGCGGTGC GCCACATAAA
AACGGTTATG GTTTGATTGG CATGAAAGAG CGAATTGAAA ATCTTCACGG AACGCTTGAT
TATGGAAAAA TGAATGATGG AACGTTTAGT ATTGTTGCTT TTATTCCATA TTCCTACAGC
GCAGACCAGT CAAACAGTAC TGCTTCTGTA TTAAATAGTA TTCATAACGT TACTCATAAG
AATGCAAAAG TTAATAATCA AGCAGAAGCA CAAACAAAAC CGGAAAATGC AAACGTTTCA
ACATCATCGG AAGTTTCGAC AAACGTTTTG CCATACGTTT TACCAGAAGC AAATACTTCA
AAAAATAGGA TTGAGAAAGT ATCACAATGG TTTGAACAAC ATTGGCTTAT TGGAGACATT
ATTTATGCAT CACCTTGGGT TGTTATGATG CTCTTTCTGC CAACCTACGA TTTTATTGTT
GGAGTTGGAA TGTCTTCACA ATATTCCAAC TCGCTTTCAT TACAAATACT TTATAAAGTA
TTTACTCTTA CAACCATGGT GCCATTCATG TTTCGCAGAA AAGCTCCAAC CGCATGCGCA
ATTGTTGCAG CAGTATTTTC TGCAATACAG CTTATACTCT TGCCGAATAT TTTATTCGCT
AATTTTTTCA TACCAAATAT TATTTACGCT GCTGTGCTCT ACGGTAAAAA ACGCGCATGG
CAATGGGTTA GCGCAGTAGT GCTTGCCGAA TCTGCTATTT TCGCCGTAAA AATTGGTATT
TCATCAAAAA ATATTCCACA AACTGAAACT CCAATACGAT TCTTTACATC AAATATTGCC
ACAACCAATT TTTATGACTT TATGCAATTT GCGTCCGTTG GATTAGTTTT TGGTTTTATA
GTTGCGTTAA TTTGTTTTGC GGCCATTGCA TTTGCTTATT CCCGCAGAAA CGATGACAAT
AATTTGCTGA TTCTAAAAGC GCGCAGAACA GAATTAGAGC AAGAGCAAAA ACAGCTAGAA
GTACTTGCAG CTAACGCAGA AAGGCAACGA CTTAGCTCAA ATATTCAGCA AAAAGTTGCT
ATTACATTGC ATAAAGTAAT CGATGCCGCA AATAGCGGAA TTGATATGCT AAATAAATAC
GAAAAAACAA ATAGCAATGC AGAAAATCGA AAGTTATCAG AACCAAAGCA ATCACAGGAA
CAAAGTGAAG AAATTAGTAA AGCCTTTAAA AATATTGGAG ATGAAGGTCG TTCGGCACTG
AAATATATGC GAAAATTGCT TGGAGTTTTG CGAGAAACAG GTTCAAGCGT TCATTCAGCA
AATAATGCTG CGAATGTAAC TGAGATTGCT ATTCGCCCTG CTGCCCCACT TGATGAGCAA
ATTCAACACA ACGCATTAAA TAAGCAATAG
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| Protein sequence | MKISHTFNSC IQRLRTELTL NDILWGIIPF ILFMLSSDRY VISNVDGFLT QGSLITVTLI
NIVVALLLSV RKLWPEQSAT IFIVICIVQV AFGSTQLFAD FFGFVLLVNA IARGNPEHSK
AFVIAAYVTT VLSCAIISWN IVMGPIYGNN HSKASYTCSV QNINSSNIKN CVSNILNFAI
PSIIFAIITT TITVIIGYWQ RTHVHTIQLL QDHNNAIRAY RKKAQHIAVT AERARIARDM
HDIVAHTLSI IIVQADGGRY AATKDISLAK KTMHIIKNEA ERAVHDMRRL LEALTDAPSG
QLDFNHVPSL IEQAKIASPK NIFWHTVDGI NSQNRLNADA QTVAYRVVQE SLTNIRKHAG
DGIKINIHEQ WKNQGLTLKI TNEINKLEAN QEQNSGAPHK NGYGLIGMKE RIENLHGTLD
YGKMNDGTFS IVAFIPYSYS ADQSNSTASV LNSIHNVTHK NAKVNNQAEA QTKPENANVS
TSSEVSTNVL PYVLPEANTS KNRIEKVSQW FEQHWLIGDI IYASPWVVMM LFLPTYDFIV
GVGMSSQYSN SLSLQILYKV FTLTTMVPFM FRRKAPTACA IVAAVFSAIQ LILLPNILFA
NFFIPNIIYA AVLYGKKRAW QWVSAVVLAE SAIFAVKIGI SSKNIPQTET PIRFFTSNIA
TTNFYDFMQF ASVGLVFGFI VALICFAAIA FAYSRRNDDN NLLILKARRT ELEQEQKQLE
VLAANAERQR LSSNIQQKVA ITLHKVIDAA NSGIDMLNKY EKTNSNAENR KLSEPKQSQE
QSEEISKAFK NIGDEGRSAL KYMRKLLGVL RETGSSVHSA NNAANVTEIA IRPAAPLDEQ
IQHNALNKQ
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