Gene HMPREF0424_0639 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0639 
Symbol 
ID8709017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp712491 
End bp713039 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content38% 
IMG OID646482745 
Productconserved hypothetical protein TIGR00252 
Protein accessionYP_003373869 
Protein GI283783115 
COG category[L] Replication, recombination and repair 
COG ID[COG0792] Predicted endonuclease distantly related to archaeal Holliday junction resolvase 
TIGRFAM ID[TIGR00252] conserved hypothetical protein TIGR00252 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.372666 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTACAC AAAAACACAT TATTGACGAT GAAATTATCT CGCTTGACGA GATTGACGAC 
GCTGAGACTG CTCAAGTATT TTTGCAAGAA AAACTTGAAC AAGTGTCCAA CGAGCTTCAA 
GATGATTCTC TTGAAAGTAA AGAGTTGGGA AAACTGGGAG AAACATACGC CACTTTGCGA 
CTCATACAAA AAGGGTGGCA CGTTATTGAC CAAAACTGGC ATTGCCGTAA TGGAGAGCTA 
GATTTGGTGA TGATTACTCC AGAACAAAAA TTGGTATTCG TGGAAGTAAA AACTCGAAGA 
AGCGTACGTT GTGGCACTCC ACTTGAAGCA ATTACTCAAG AAAAACGTAG CAAATTACGT 
ACAACTGGTA TGAAATGGCT GGAAGAATTC GGAAGCGACA TACCTCATTA CCGTATTCGA 
TTTGACGCTG TATCAATTCT TATTATTAAC AAATACACTT ATCCAGATTC TGCATATGAA 
TTGCAATCTT TGGAAGAAAT TGAAGATAAT TCATCAATCC AATTCAAGCA TGTTCAAGGA 
GCATTCTAA
 
Protein sequence
MITQKHIIDD EIISLDEIDD AETAQVFLQE KLEQVSNELQ DDSLESKELG KLGETYATLR 
LIQKGWHVID QNWHCRNGEL DLVMITPEQK LVFVEVKTRR SVRCGTPLEA ITQEKRSKLR 
TTGMKWLEEF GSDIPHYRIR FDAVSILIIN KYTYPDSAYE LQSLEEIEDN SSIQFKHVQG 
AF