| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0636 |
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| Symbol | |
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| ID | 8710073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 707320 |
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| End bp | 709266 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482742 |
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| Product | putative succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_003373866 |
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| Protein GI | 283783112 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.156837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCAA GCGAATACTA CGATGTTATT ATTGTTGGCG CTGGAGCTGC AGGATTATCT
GCAGCACTAG GATTAATTAA ATCCGAAGAA TACGCATGCA TGAAAAAAGA AGGAAAAACA
CCATCAATTT TAGTGATTTC TAAAGTGCCA GCATTGCGTT CACACACGGG TTCTGCTGAA
GGAGGTATAG CAGCAAGCCT TGGGAATGTA GAGCACGACA AATGGCAATG GCATTATTAT
GACACAGTTC ATGGCGGAGA TTGGCTAAGC GATCAAGATG CAGCAAAGCT ACTTGCAAAA
GAAGCACCAA AAACAGTTAT TCAGCTTGAA CATGATGGCG TAGCATTTTC TCGAACACAA
AATGGATATA TTAACCAACG CCGTTTTGGT GGACATACTG CTAATTTTGG AAAGAATCCA
ATTGAACGTG CAGCTTTTGC TGCAGATCGT ATTGGTCACC AAATTTTACA TAGCTTATGG
CAACAATGTG TTTCCGAGAA TATTGTATTT GCTGAAGATT GTTACGTAAC AGATGTTGCT
ATAAACGATC AAACTATGAG CGTTGAAGGA ATTGTTGCAT TTGATTTATC TGCAGGAGAC
TTGCGAGCAA TAAAGTCTAG ATTCCTACTT TTAGCTACAG GCGGATCGGG AAGATTATTT
GCAACAACAT CTAATTCGTG GGATTTAACA GGCGATGGCA TGGCTTTAGC TTTAAAAGCA
GGATTACAAC TTGAAGACTG CGAGTTCATT CAATTCCACC CTACTGGACT AGCTCATACT
GGTATTCTGC TTTCAGAAGC AGCAAGAGCT GAAGGCGGCG TGCTTAGGAA CTCAAATGGC
GAAGCTTTTA TGAAAAAATA CGATGAAGCA CATGCAGATT TAGCTCCAAG AGATGTTGTT
TCTCGTGCAA TTGCCCAAGA AATTCGCGAA GGCAGAGGTG TAAACGATTC AACAACTACG
CAACAAAGCA ATTCACATAA CGATTGCGTT TGGCTAGATA TGACACATAT CAGCCGAGAA
AATATGTTAG AATACTTGCC ACAAGTCACA GAAACTATTG AAAAATATGC TCATCTTGAC
CCAACTTGCG ATTTAGTCCC AATTCGTCCT ACAGCTCACT ACACAATGGG CGGAATACCG
ATAACTTTGG ATGGAAAAGT ATATAGATGG CAAAATAACA ACCAAACTAT TGTTTATGGT
TTATACGCTG CCGGAGAATG CTCATGCGTA GGAGTGCACG GAGCTAATCG ATTAGGAGGA
AACTCCTTGC TTGACGCATG CCTTTTTGGA AATCGCGCGG GAGCAACAAT AGCAAAAGAA
TTGAAAAACT TAAACAAGGA TGACGAAACT AACAGTAACA AAACCAACGA AACCAACGAA
ACCAATAAAA CTTTCTCAAA TAATACTGCA CTACAAGTCT TATATAAACA AAGAAATAAT
GAACTTAATC AGCTTATGGA AACAAGTGCG AAGCAAGCTA CAGATTTTAC AAACAACAGC
TATAACGACG AGTCTTCACA AATAGAAGAA GATAATCCTT ATAAATTATT TGCAGATTTA
GGAAAAATCA TGGAAAACGC TGTTGCAATA TCATGTGACG AACAATCAAT TAAAAAAGCA
CTCAATGACA TACAAGAATT TATAGATCCT AAAATTCAAT CATTACACAT CCATAGCAAT
AATTTAGTTT TTAACCAAGA AATTACTGCA ATATGGGAAA TAAAGAACAT GTCACTACTT
GCAAAAGCAG CATTGCAATC TTCACTTGCT AGACATGAAT CTAGAGGTGC TTTCTTTAGA
AGAGACTATC CAAAACATGA TATTTCTTCA TTGCCACAAC ACTCGTTCAT TGACTTTGAT
GGAAACTTGG CAAAAAAGTC AGTGAATATT ATTGATTTTA AACAAGATAG TAAAGGAGAT
TTTTATACTG AAAATAGCAT AATTTAA
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| Protein sequence | MQSSEYYDVI IVGAGAAGLS AALGLIKSEE YACMKKEGKT PSILVISKVP ALRSHTGSAE
GGIAASLGNV EHDKWQWHYY DTVHGGDWLS DQDAAKLLAK EAPKTVIQLE HDGVAFSRTQ
NGYINQRRFG GHTANFGKNP IERAAFAADR IGHQILHSLW QQCVSENIVF AEDCYVTDVA
INDQTMSVEG IVAFDLSAGD LRAIKSRFLL LATGGSGRLF ATTSNSWDLT GDGMALALKA
GLQLEDCEFI QFHPTGLAHT GILLSEAARA EGGVLRNSNG EAFMKKYDEA HADLAPRDVV
SRAIAQEIRE GRGVNDSTTT QQSNSHNDCV WLDMTHISRE NMLEYLPQVT ETIEKYAHLD
PTCDLVPIRP TAHYTMGGIP ITLDGKVYRW QNNNQTIVYG LYAAGECSCV GVHGANRLGG
NSLLDACLFG NRAGATIAKE LKNLNKDDET NSNKTNETNE TNKTFSNNTA LQVLYKQRNN
ELNQLMETSA KQATDFTNNS YNDESSQIEE DNPYKLFADL GKIMENAVAI SCDEQSIKKA
LNDIQEFIDP KIQSLHIHSN NLVFNQEITA IWEIKNMSLL AKAALQSSLA RHESRGAFFR
RDYPKHDISS LPQHSFIDFD GNLAKKSVNI IDFKQDSKGD FYTENSII
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