| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0634 |
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| Symbol | ubiC |
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| ID | 8709918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 706292 |
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| End bp | 707023 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482740 |
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| Product | UbiC transcription regulator-associated |
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| Protein accession | YP_003373865 |
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| Protein GI | 283783111 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.124125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTCGAAG GTGTGCCTAA ATACATTGCT GTGCGAGATA ATCTACGCGC TCGCATTGAT
TCTATGGAAG CGAACGAACA ATTACCTCCT GAAATTGAAT TGTGCAAACA ATACAATGTG
AGCCGTATTA CTTTGAGGCA TGCAGTCGAT AACCTTATTA CTGAAGGATT ACTTGTTCGT
GAGCAGGGTA GAGGAACATT TCGAGCTTCT TCAATTATTC CTAGTTATAG TCAAGAAGTA
ATTTCTGATC GTGCGCAAGG ATTTTACGAG CAGACTTATT CTAATGATGC AAAAATTAGA
ATAAAAGTTA TTGAAAACGA TGTTATTCAT GATGAAGATG CTGCTGCTCG TTTAGGCCTT
GATCCAGTAG ATGAATTGAT ATGTTTGAAA CGCTTGCGTT ATGTTGACGA TGTTTTATCG
CGTTATAGTG TGCTCTATTT GCCTGCTTCT CGTTTTCCTA AAATTTTGAC GCATGATTTT
TCAGATGAGT CGTTATCTGA TTTTTTGCTT AAAGCGTACG CTGTTCAACT TGTAGAAAAT
GAAGTGTCTG TGCATATAGA AAATCTATGT GACAGGCTTG CAGCAGTACT TAACCTTGAA
GTTGGAACTC CTGCAATTAC AGCTTATTCT ACTGTAAAAG ATAAGTTTGG TACGATTATT
GCTTTTGGTG CATCTGTTTA TGCGCCAAAT TCTGGTGAGA TTCGTTTCCA CCTGCATTCA
AATGCTGCTT AA
|
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| Protein sequence | MVEGVPKYIA VRDNLRARID SMEANEQLPP EIELCKQYNV SRITLRHAVD NLITEGLLVR
EQGRGTFRAS SIIPSYSQEV ISDRAQGFYE QTYSNDAKIR IKVIENDVIH DEDAAARLGL
DPVDELICLK RLRYVDDVLS RYSVLYLPAS RFPKILTHDF SDESLSDFLL KAYAVQLVEN
EVSVHIENLC DRLAAVLNLE VGTPAITAYS TVKDKFGTII AFGASVYAPN SGEIRFHLHS
NAA
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