| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0629 |
|---|
| Symbol | |
|---|
| ID | 8709115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 700583 |
|---|
| End bp | 702679 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 646482738 |
|---|
| Product | copper-exporting ATPase |
|---|
| Protein accession | YP_003373863 |
|---|
| Protein GI | 283783109 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.863385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA ACAACAAACA TTCATCCCAC AGTCACCATA ATCATGGCGA CATGGATCAT
TCAAAACATG AGCACGTAAG CACAGACGAA CATGGAGACC ATAATAATCA ACATCAAGAA
CATCATGCTG GGCATGATCA CAGCGGACAC AGTGGGCATG ACCACCATCA TCACGGAAAC
TTTAAGGAAC TTTTCTTAAA ATCATTGCCA CTAGGAATCA TTATTATGCT CTTATCCCCT
ATGGCTGGGT TTGACCTACC ATTCCAGTTT ACTTTTCCAT ATTCTGATAT TGTAGTAGCT
ATTTTATCTA CTATATTAAT TATTTATGGT GGACGTCCAT TCTATCAAGG GGCAGTTGAC
GAATTTAAAC AAAAAGAACC TGGAATGATG GCTCTCGTAT CTTTAGGTTT AAGTGTTTCA
TATTTATATA GTATTTATAC TGTAATAGCA AGCTACGTAA CAGGTGAACA AATTATGGAT
TTTTTCTTTG AATTTGCTTC ATTACTATTA ATCATGTTAT TAGGTCACTG GATTGAGATG
AAAGCTATTG GAGAAGCAGG AGACGCACAA GCAGAATTGG CTAAGTTAGT GCCGAAAGAT
GCTCACGTTG TATTAGAAGA CGATTCAATT GAAACACGAC CAGTTGCTGA CTTAAAGGTA
GGTGATTTAA TTCGAGTTCA AGCTGGAGAA AATGTGCCAG CAGATGGAAC TATCGAGCGT
GGAGAATCAC GTCTAAATGA AGCTCTTTTG ACTGGGGAAT CAAAAGCAGT TAAAAAAGGT
CCTGGCGATG AAGTAATCGG AGGCTCAACA AATGGGGAAG GGGTTCTTTA TATTAAAGTG
AATGAGACAG GTGATCAATC CTTCATCTCT CAAGTACAGA CTTTAATCAG CCAAGCTCAA
AGTCAGCCTT CCAGAGCAGA AAATATTGCT CAAAAGGTTG CAGGGTGGCT CTTCTATATT
GCGGTCATTG TCGCACTAAT AGCTTTTGTA GTATGGACGC TTATAGCGGA CATCCCAACG
GCAGTAAAAT TTGCTATCAC AACATTAGTT ATAGCTTGTC CTCACGCTTT GGGTCTAGCT
ATTCCATTGG TAACCGCTCG TAGCACAAGC TTAGGGGCAA GTCGTGGCTT ACTAGTAAAA
GACCGAGAAT CTTTAGAAAT AGCTCAAGAT GCAGATGTGA TGATTTTAGA TAAGACAGGT
ACTTTAACAA CAGGTGAGTT TAAAGTATTA GATGTTGAAC TTTTTAATGA AAAATATACA
AAAGAAGAAA TCATTTCACT ATTGGCAGGT ATTGAAGGAG GGTCTAGTCA CCCTATTGCT
CAATCAATTA TAAGTTTCGC CGAGCAGCAA GATATACGTC CAGTATCTTT TGATTCGATT
GATGTAATTT CCGGTGCTGG CGTAGAAGGT AAAGCCAATG GGCACCAATA CCAATTAATC
AGTCAAAAAG AATACGGGCG TAATCTAGAT ATTGATATTC CAAAAGGAGC AACCCTCAGT
GTCTTAGTAG AAAACGATGA TGCCATTGGT GCTGTAGCTT TGGGGGATGA ATTAAAAGCA
ACCAGTAAAG AGTTAATTAA AGCTCTTAAA AATAACAATA TAGAGCCAAT TATGGCAACA
GGTGATAATG AAAAAGCGGC TCAAGGCGCG GCAGAAGATT TAGAGATTGA ATATAGATCA
AATCAATCTC CACAAGACAA ATATGAGTTA GTAAAAACAC TTAAAGAAGA AGGAAAAAAA
GTTATCATGG TAGGTGACGG TGTCAATGAT GCTCCTTCTC TTGCCTTAGC AGATGTTGGT
ATAGCTGTAG GTGCTGGAAC CCAAGTGGCA TTGGATTCAG CTGATGTCAT CTTGACTCAA
TCTGATCCAG GAGATATTGA ATCATTCATT GAATTAGCAC ACAAAACAAC TCGTAAAATG
AAACAAAACC TCTTTTGGGG AGCTGGTTAT AACTTTATAG CTATCCCTCT AGCTGCAGGA
ATTTTGGCCC CTTTTGGTTT CACATTAAGT CCTGCAGTAG GAGCAATTCT AATGTCTGTG
TCAACAGTCA TCGTCGCCAT TAATGCTATT TTATTAAAAT TAGATCCGAA AAAATGA
|
|---|
| Protein sequence | MNNNNKHSSH SHHNHGDMDH SKHEHVSTDE HGDHNNQHQE HHAGHDHSGH SGHDHHHHGN
FKELFLKSLP LGIIIMLLSP MAGFDLPFQF TFPYSDIVVA ILSTILIIYG GRPFYQGAVD
EFKQKEPGMM ALVSLGLSVS YLYSIYTVIA SYVTGEQIMD FFFEFASLLL IMLLGHWIEM
KAIGEAGDAQ AELAKLVPKD AHVVLEDDSI ETRPVADLKV GDLIRVQAGE NVPADGTIER
GESRLNEALL TGESKAVKKG PGDEVIGGST NGEGVLYIKV NETGDQSFIS QVQTLISQAQ
SQPSRAENIA QKVAGWLFYI AVIVALIAFV VWTLIADIPT AVKFAITTLV IACPHALGLA
IPLVTARSTS LGASRGLLVK DRESLEIAQD ADVMILDKTG TLTTGEFKVL DVELFNEKYT
KEEIISLLAG IEGGSSHPIA QSIISFAEQQ DIRPVSFDSI DVISGAGVEG KANGHQYQLI
SQKEYGRNLD IDIPKGATLS VLVENDDAIG AVALGDELKA TSKELIKALK NNNIEPIMAT
GDNEKAAQGA AEDLEIEYRS NQSPQDKYEL VKTLKEEGKK VIMVGDGVND APSLALADVG
IAVGAGTQVA LDSADVILTQ SDPGDIESFI ELAHKTTRKM KQNLFWGAGY NFIAIPLAAG
ILAPFGFTLS PAVGAILMSV STVIVAINAI LLKLDPKK
|
|---|
| |