| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0619 |
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| Symbol | glgX |
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| ID | 8709149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 686139 |
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| End bp | 688268 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482728 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_003373854 |
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| Protein GI | 283783100 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATATAC GACCAGGTTC CATGTATCCG CTTGGCGCAA ACTATGATGG CGCTGGCGTG
AATTTTGCGC TGTTTTCCGA AGTTGCAAAG CGCGTTGAAT TATGTTTATT TGATGAGCAT
GATAACGAAA CACGTATTGA TATGACTGAG CAGAACTCAT ACGTGTGGCA TAACTATGTT
TCAGGCATAC AGCCTGGTCA GCGTTATGGT TATCGTGTTC ACGGACCTTA TGATCCTTCT
CATGGTTTAT GGTGTAATCC TCATAAGTTG TTGCTTGACC CATATGCCAA GGCGATTGAA
GGAAATATAG ACGGTGATGA GAGTCTTTTC TCGTATTGGT TTGATAATCC AGATGATATT
TCAGCAATGA ATACTTTGGA TTCTGCAGAC CATACGATGA AGGCTGCAGT TATTAACCCG
TATTTTGATT GGGGTAATGA TCAGCATCCT ATGATTCCGT ATCATGATTC TGTTATTTAC
GAAGCTCATG TTCGTGGAAT GACTAATCTT GATAAACGTG TTCCTCCAGA TATTAGAGGC
ACTTATGCTG GACTTGCACA TCCAAGCGTT ATTTCTTATT TAAGGAAGCT TGGTGTTACT
GCAATAGAAT TGATGCCTAT TCATCAGTTT GTAAATGATT CTTTCTTGCA AAATAAAGGA
TTAAGTAACT ACTGGGGATA CAATACTATT GGTTTCTTCG CTCCTCAAAA TTCTTACTCC
AGTTCTGGTC AGCGCGGAGA GCAGGTTAAC GAATTTAAAT CAATGGTTAA GGCATATCAT
GCTGCAGGTA TGGAAGTTAT TCTAGACGTG GTTTACAATC ACACTGCTGA AGGCAATGAC
CGTGGCCCTA CTTTGAGTTT CCGTGGTATT GATAATCGCG CATATTATCG CCTTGTAGAT
AATGACCAGC GTCACTATTT TGATACTACC GGTACTGGTA ATTCCTTACT TATGCGTTCT
CCGAAAGCAT TGCGATTGAT CACAGATAGT TTGCGTTATT GGGTAACTGA AATGCATGTT
GATGGCTTCC GTTTCGATTT AGCAGCAACT CTTGCGCGTC AGTTCCAAGA AGTAGATAAA
CTTTCTGCAT TCTTTGACAT TATTGAGCAG GATCCTATTA TTTCAAGTGT AAAACTTATC
GCTGAGCCTT GGGATATTGG TGTTGGTGGA TATCAAGTTG GTGGATTCCC TCCAAGTTGG
TCCGAATGGA ATGGAAGATA TCGCGATTGT GTCCGCGACT TTTGGCGTTC ACAACCATCT
ACATTACCTG AATTTGCCAG TAGACTTATG GGTAGCTCAG ATTTATATGA GCAAAATGGA
CGAAAGCCTG TAGCTTCCGT GAACTTTATT ACAGCTCACG ATGGCTTCAC TATGAACGAT
TTAGTTAGCT ATAACGAAAA GCATAATGAA GCTAATAAGG AAGGCAATTG CGATGGTGCG
AACGACAATC GTTCGTGGAA TTGCGGTGTT GAAGGACCTA CTAATATTCA CGATGTTAAT
GAATTGCGTG AACGTCAAAT ACGTAATTTG TTCTCAACTC TTTTGATGAG CCAGGGCATT
CCTATGATAT GCGCTGGTGA TGAAGTCATG CGTACGCAGA AGGGCAATAA CAATGCTTAT
TGTCAAGATA ACGCTATTTC GTGGATAAGT TGGGATTATA ACGAAACTCA ACGAGATATG
TTCGATTTCG TTTCCAAGCT TATTCACTTG CGATTAAAGC ACCCTGTGTT GCATCGTCGT
CGTTTCTTTA CGGGTCGTTC TGCTGGAGAT GATGTAAGCG ATATTCCACA AGTTGAATGG
CTTGATCATA ACGGTACTGT TATGGATATG GAGGACTGGT CAAATACTCA TGCTTTATCT
GTGATGATTT ATTTGAATGG TTCGGATATT CCAGAAACTG ACTGGTATGG AACGAGAATG
GTTGATAATG ACTTTATTCT TATTTTTAAT GCGCATTATG AACCTATTAC TTTTACTTTG
CCAGATAAAC GTTATGGTGA GAAGTGGAAG TTGATTGTGG ACACATATAA TCCAAAGGGT
CCAGAATTGT TATATGAGGC AGGATTTAAT ATTGTTGCAC AATCTCGTAG TTTCTTGCTT
CTTATGAGTG AGCATAAACC AGAACATTAA
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| Protein sequence | MHIRPGSMYP LGANYDGAGV NFALFSEVAK RVELCLFDEH DNETRIDMTE QNSYVWHNYV
SGIQPGQRYG YRVHGPYDPS HGLWCNPHKL LLDPYAKAIE GNIDGDESLF SYWFDNPDDI
SAMNTLDSAD HTMKAAVINP YFDWGNDQHP MIPYHDSVIY EAHVRGMTNL DKRVPPDIRG
TYAGLAHPSV ISYLRKLGVT AIELMPIHQF VNDSFLQNKG LSNYWGYNTI GFFAPQNSYS
SSGQRGEQVN EFKSMVKAYH AAGMEVILDV VYNHTAEGND RGPTLSFRGI DNRAYYRLVD
NDQRHYFDTT GTGNSLLMRS PKALRLITDS LRYWVTEMHV DGFRFDLAAT LARQFQEVDK
LSAFFDIIEQ DPIISSVKLI AEPWDIGVGG YQVGGFPPSW SEWNGRYRDC VRDFWRSQPS
TLPEFASRLM GSSDLYEQNG RKPVASVNFI TAHDGFTMND LVSYNEKHNE ANKEGNCDGA
NDNRSWNCGV EGPTNIHDVN ELRERQIRNL FSTLLMSQGI PMICAGDEVM RTQKGNNNAY
CQDNAISWIS WDYNETQRDM FDFVSKLIHL RLKHPVLHRR RFFTGRSAGD DVSDIPQVEW
LDHNGTVMDM EDWSNTHALS VMIYLNGSDI PETDWYGTRM VDNDFILIFN AHYEPITFTL
PDKRYGEKWK LIVDTYNPKG PELLYEAGFN IVAQSRSFLL LMSEHKPEH
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