| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0617 |
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| Symbol | polA |
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| ID | 8709537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 682074 |
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| End bp | 685151 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646482726 |
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| Product | DNA-directed DNA polymerase |
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| Protein accession | YP_003373852 |
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| Protein GI | 283783098 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATACCG ACATCGTTGA AGAACATTCT TCGGAACTTA AGAATGAGAA AGGAACGTTG
TTGGTTGTTG ATGGCCATTC TCTTGCGTTC CGTGCTTTTT TTGCAATATC TGCGGATAAT
TTTTCTACTC GCTCTGGGCA AGCAACAAAT TCCATTTGGG GATTTATTAC TATGCTTTCA
CAGGTTGTAA AAAAAGAGAA GCCTGACCGC TTAGCTATTG CTTTTGACGT TAAAGGTGGA
ACTTTTAGAA ATACTATGCT GCCTCAATAT AAAGGTACTC GTGATGCTGC TCCACAGGAG
CTTCTTTCGC AGCTTCCTAT CATTCAACAG ATGCTTAAAG CTCTTGGTGT CACTTATATT
GAGAAACCCG GTTATGAAGG TGATGATGTT ATTGGCACTC TTGCAGTAAT GGGTTCGAAT
GCCGGTTATA GAACTTTAGT ACTTTCTGGC GATCGTGATG CATTCCAACT GATAGATGAC
AATATTACTG TTTTATATCC AGGACAGCAT TTTAAAGACT TAAAAGAAAT GGATAAGAAT
GCTGTTTATG AAAAATATCA TGTTACGCCT AAGCAATATC CTGATTTAGC AGCGTTAAGA
GGAGAAACTG CAGATAATAT TCCAGGAGTT CCAGGTGTTG GAGATGGGTA CGCTGCTAAA
TGGATTAATC AATTCGGCAG CCTAGAAAAT ATTATTGAAC ATTCGAATGA GATTAGCGGT
AAAAAGGGAG AAGCTTTAAG AGAAAATATT GATCAAGTTC GTTTAAACCG TAAAGTTAAT
GCTTTAGTTT GCGATTTGGA TTTAGGCGTA ACTGTAGATG ATTTGTGCTT TGGTGATGTT
GATGCTGCAA AATTAGGAAT CTTGCTGTCT CAACTTGAAT TTGGCGAATT AAAAAAGAGA
AAGATTCTCA AAACTTTTAG CAACGGTATG CAACAATCTA TCGAAAATAA TATGCGTATA
ATGTTTTCGT CTACGTATGA AGGTGACGCT AATGACGATA AGCTAGCTCA AAGTGCTCAA
TCAAATATTG ACGCAGAAAA TTTTCAAGAA ATGCTAGCAG GCATTGACTT ACATCATGTT
AAAACTGTAG AGGACTTTAT TGATTGGGAG AATTCAGTTT CTTCTTTGCT TTATACAAAA
ATAAAGAAAG ATTCAAAAAA TACTGAAGAT ACTTTCGATC AAGTAAGTTC TGAGGAAGAG
AATTTTGAAG AATTAAATTC CGAAAAAATT ATAAATAATT CTCGTAAATG TGCTGAACCT
ATACTGAAAA ATCAAGAAGT AGTGATATAC GCTCATGAGT GCAATAAGAA TTCAAAACAT
CATTTTGAGT TGATTGCAGA TTGTTTAATA ATTCTTATTG CTAATAAAGC TGCAATATTA
TATACGACTG ATTTGCAATC GTCAGATCAA GCTTTGCTTG AGATGTTGCG AAAGTTCTTG
CAAAAAAATT CCTCAATAAC AGTATTGCAT GACTATAAAA AGCATTTGGG ATTGCTAAAA
TCGCTAAAAT TATTCGATTC GAATAATTCA TTTGGCACTC CACTTCTTGA TACTCGATTG
GCATCATATT TATTGGAGCC AGATTTTCGA GCTGAGACTT TAGAAAATAT GGCTGAGCAT
TATTTAGATA TTCAGTCAGT TGAAGATAAT TTGGGTGAAA ATGAAGCTAA GCAAGGTGAG
CTTGATCTTC TTATTGACAA TGAAGTGTCA TCTAGTGAAG AAGAAACTAA TGAAAAGCAA
ACTCAAGCAC GTGAAGCAAA ATTCTTGAAA ACTGCGCTTC TTATTCGTCT TTTGGCTCTT
CATTTTGCTT CAACACTTGA CGATAGGAAA CAAACTGGTT TGATGACTGA TTTGGAAATG
CCTATTTCGC GAGTTTTGCG TGGCATGGAA GACGTCGGTG CTGCAGTCGA TATGCAACGT
TTAAGTGGTA TGCTTAAGCA ATTTTCTGCA GATGCTGAGT TTGCGCAAAA TATGGCTTGG
AAAGTTGCAG GTAGTTCTGT TAATTTACAA AGCCCTAAGC AGTTGCAGCA AATACTTTTT
GAGCATTTTG GTCTTAAACC TACTCGTCGC ACAAAGAATG GCTCGTACAC GACTAATGCC
GAAGCTTTGC AAGCTATGTA CGTTAAACTC GATCCCGAAG AGCCTGCAAG TCAATTCTTG
GGTGCTTTAC TTAAACATCG CGAAACTAAT AAATTGAAGC AGATTGTGCA AAGTTTAATT
GATGCGGCTC ATTATGACGA TAGGCGCATC CATACAACTT TTGAGCAGAC TATTGCAGCA
ACTGGTCGTT TAAGTTCTGC TGATCCTAAT CTTCAAAATA TTCCTAATAG GAATGCTGCT
GGTCGTGAAA TTCGTGCTGC TTTTATTCCA GGAGAAGAAT TTGAATATTT AATGAGTTGT
GATTATTCAC AAGTTGAGCT TCGTATTATG GCTCATGCAT CTCATGATAA AACTCTTATT
GAAGCATTCC GTTCCGGCGT AGATTTTCAT AAATATGTTG CTAGCTTAGT TTATAAGATT
CCTGTTGAAC AAGTAACGCC GGATCAACGT TCTCATGTAA AAGCTATGAG CTATGGATTG
GCATATGGAT TGAGTACTTA TGGGCTGGCA AAACAGCTTT CTATTAGTCC GGCTGAAGCT
GAAATGTTAA AAAATAAGTA TTTTGATACT TTTGGCAATG TTCATGACTA TTTGGAATCT
CTTGTGTCGA AGGCAAAAGA ACTTGGGTAC ACAGAAACTA TGTTTGGTCG ACGTAGGTAT
TTCCCGCAAC TTTCTTCCAA TAATCGTGCA TCTCGTGAAG CTGCTGAGCG CGGAGCTCTT
AATGCTCCAA TACAAGGTAC TGCTGCAGAT ATTATGAAAC TTGCTATGCT TCGTGTTGAT
TTGGGATTGC GTGAAGCAAA AGTGCGCAGC CGCGTAATAT TGCAAATACA TGATGAATTG
ATTCTGGAAA TTTCACATGG TGAGCAAGCG CAGGTAGAAA ATATTGTGCG TAAAGCTATG
GAAAATGCTG TGCATTTAGA CGTTCCTCTT AGTGTTTCTA CTGGAGTTGG TGTAGATTGG
CAACTAGCAG CGCATTAG
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| Protein sequence | MNTDIVEEHS SELKNEKGTL LVVDGHSLAF RAFFAISADN FSTRSGQATN SIWGFITMLS
QVVKKEKPDR LAIAFDVKGG TFRNTMLPQY KGTRDAAPQE LLSQLPIIQQ MLKALGVTYI
EKPGYEGDDV IGTLAVMGSN AGYRTLVLSG DRDAFQLIDD NITVLYPGQH FKDLKEMDKN
AVYEKYHVTP KQYPDLAALR GETADNIPGV PGVGDGYAAK WINQFGSLEN IIEHSNEISG
KKGEALRENI DQVRLNRKVN ALVCDLDLGV TVDDLCFGDV DAAKLGILLS QLEFGELKKR
KILKTFSNGM QQSIENNMRI MFSSTYEGDA NDDKLAQSAQ SNIDAENFQE MLAGIDLHHV
KTVEDFIDWE NSVSSLLYTK IKKDSKNTED TFDQVSSEEE NFEELNSEKI INNSRKCAEP
ILKNQEVVIY AHECNKNSKH HFELIADCLI ILIANKAAIL YTTDLQSSDQ ALLEMLRKFL
QKNSSITVLH DYKKHLGLLK SLKLFDSNNS FGTPLLDTRL ASYLLEPDFR AETLENMAEH
YLDIQSVEDN LGENEAKQGE LDLLIDNEVS SSEEETNEKQ TQAREAKFLK TALLIRLLAL
HFASTLDDRK QTGLMTDLEM PISRVLRGME DVGAAVDMQR LSGMLKQFSA DAEFAQNMAW
KVAGSSVNLQ SPKQLQQILF EHFGLKPTRR TKNGSYTTNA EALQAMYVKL DPEEPASQFL
GALLKHRETN KLKQIVQSLI DAAHYDDRRI HTTFEQTIAA TGRLSSADPN LQNIPNRNAA
GREIRAAFIP GEEFEYLMSC DYSQVELRIM AHASHDKTLI EAFRSGVDFH KYVASLVYKI
PVEQVTPDQR SHVKAMSYGL AYGLSTYGLA KQLSISPAEA EMLKNKYFDT FGNVHDYLES
LVSKAKELGY TETMFGRRRY FPQLSSNNRA SREAAERGAL NAPIQGTAAD IMKLAMLRVD
LGLREAKVRS RVILQIHDEL ILEISHGEQA QVENIVRKAM ENAVHLDVPL SVSTGVGVDW
QLAAH
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