Gene HMPREF0424_0598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0598 
Symbol 
ID8708894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp656189 
End bp656785 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content41% 
IMG OID646482707 
ProductCarD-like protein 
Protein accessionYP_003373834 
Protein GI283783080 
COG category[K] Transcription 
COG ID[COG1329] Transcriptional regulators, similar to M. xanthus CarD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.80876 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAATATC AAGTCGGCGA TATGGTCGTC TATCCTCGTC ATGGTGCGGC TCGTGTTGAA 
GAAATTAGTG AGCGCACCGT AAAAGGTGTA ACTCGTCAAT ATTTACGATT GGTAGTGTTA 
TCATCTGATG GTTTAGAAAT TAACGTACCT GTCGATAATG TTAAAAAAGT TGGCGTGCGA 
GACATTGTTG GAGCGCAAGA AGTTGCAAAA GTTTTTGAGA TTTTGCGTAC TCCAATAGTT 
GAAAAAGAGA TGAATTGGTC TAGACGCTAC AAGCTTAATG TAGAGAAGAT TGCTACTGGC 
GATGTTAACA ATATTGCTGA AGTAGTTCGT GATTTATCTC AGCGAGATGT TGATGAACAT 
GGTTTATCTG CAGGAGAAAA GCGAATGCTT GCTCGCGCTC GCAGTATTTT AATTTCCGAA 
ATTGCTTTGT CTGAAAAGAT TGATGAGATT GAGGCGGAGC GACTTTTAGA TGTGAATCTT 
GGATACAAGG AGCCTCAAGA AGGCGATGAA AATCACCATA CTGTAGCTCC AGAAGAGCCT 
GCATCGCGAA CTTTAGCGCT GTTAGAAGAG CGTAGCAAGA AATCTAAGAA AAAATGA
 
Protein sequence
MEYQVGDMVV YPRHGAARVE EISERTVKGV TRQYLRLVVL SSDGLEINVP VDNVKKVGVR 
DIVGAQEVAK VFEILRTPIV EKEMNWSRRY KLNVEKIATG DVNNIAEVVR DLSQRDVDEH 
GLSAGEKRML ARARSILISE IALSEKIDEI EAERLLDVNL GYKEPQEGDE NHHTVAPEEP 
ASRTLALLEE RSKKSKKK