| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0590 |
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| Symbol | |
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| ID | 8709643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 644347 |
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| End bp | 647748 |
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| Gene Length | 3402 bp |
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| Protein Length | 1133 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482699 |
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| Product | putative ATP synthase F0, A subunit |
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| Protein accession | YP_003373826 |
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| Protein GI | 283783072 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.875026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCGA TAACCGCTCA TAATCTTACA TTTGAAGACG AAGTTTTACA GGTGCTGTCA
TCTGCGAAAG ATGCGCATCC TCATGATGTG GATTCGTCCA TTATGGCAAT GATGTGTGTG
GAGCGAGATA CTCGTTTTTA TGCTGATACG TTACATGCAG TACTAAGTCA ATCAATTCTT
CCTGGAACTT TAGTAATAGT CGATTGTGCT AGTCGAGTAA AGCAGACTAT GCAAACGAAT
TTACAAATAA AAATTAATTC ATCTAAGCTT GCGGGAGCAA TTAATACTAG GAAATCATTA
TTGCAGAATG CTAATAATAT CGATTCCAAT AATGCAATTG ATAGCGATTC AAAATATAGA
CCAAATACTA ATCGCGTAAA TAATACTCGC GTAAACAATA GTGAAAATAA ATCTGTACAC
ATAATTATTA TTCCCATTTC TTATGCTCAT TCTTTTGGAG ATGCAATAGA AAAATCTTTG
CGCAAGATTT TGCCTTGTGC AGGAGTTTCT GCATTATGGC TTTTGCATGA TGATTCTCGT
CCTGCAGACT TCCATTGCTT AGAATATTTG CGTGAAACTT GGCGCAATAC TCCGACTGCA
TCAGTATTGG GAGCTAAACA AGTTGATTGG CAAGGAAATA TCTTGCACAA CGTTGGAATG
TATGCTTGGC GTCACGGTGT TCATACTCTT ACTGTTGACG GCGAGCCAGA TCAAGAACAG
TATGATGGGC GTGGAGATGT GTATGCAGTA TCGCTAGCAG GTGCTTTAGT CACATTAACT
GCATGGCAGA CTTTACGCGG TACGCAACCA TGGATGACAA CTTTTGGCGA ATCAAGAGAT
TTTTGTCGTA GAGTATGTCT ATCTGGAGGT CGTGTTGTTG TAGTTCCTTC AGCTCGTATC
GCACACAGGC GTGCAAGGTT AGAAGGTATC CGTACTCGTA ACGGTGATGC TAGAAATCAT
AATAATTCAG GATCTAAGTA TGGTGTAGCA GCTTCTCTCG TAGCTAAGCA GCGTTACAAA
TACACTGATA TTAGTATTTT TTTGTGGCCT CTTATATGGA TTCTTAGTTT GCCTGCTTGT
TTCGTTGGTG CTTTGCATTC GCTGTTTGCC AAACATCCTT ATATAGCGTG GATTCGTCTG
CTTTTGCCAT GGCTTGCTAT TATGCAATTA CCTAGAGCAG TTTTTGCTCG CAGAAGGGTT
GCAAGGAATA CTCGTGTTCC CTTAAAACGA CTTGTTCCTC TTATCGCAGA TCGTCATCAA
GTTGCACGTT GGCGTGATCG TAGTTCTGCT TTCCAAGCTC AACAGCATTT CGTGCTGTTA
AGTCCTCTAG CGAAGCGGCA TTTGCATATT CGAGTGTTGC GTAGGTGGAG TGCTGTTATT
CTTGCATCTC TTCTTCTTTT TGCAGTCATA TTGAATTTAT ATGGCTCTCC ATGGCGTGAA
ATTTTAAGTG GCGCTTCTTG GAATGCACAG CAATGGTTAC CAACGGGTGC AGATTTCAAT
CAACTATGGA ATTCTGCTAT TGGTGCATGG GTTCCTGATG ATGGTTTTGG ACCTGCAATT
CCTCCAGCAC CATGGCTAAG TATTTGGGCA ATCGCATCAA TTGTGGTTGG TGCTAACCCG
TTATTGGCTG TCACATTAAT GTTCTTCTTA GCTGCTCCAG CTATGTGTTT AAGTTTTTGG
GCTCTTGCTG GCGTATTTAC GCGCTCGGAT ACTGTGCGTG TATGCGCTGG TATTTGCTGG
ACTATGATTG CTATTGCTTT TGGTTTGTTT GCACGCGGTG ATTTGCCAAT GTTAATGACT
ATGGCATTTT TGCCTGCAGC ATTTGCTTTT GCGTTCCATG CTGTTGGAAT GTACGTAACA
GAAGATCCTG TGCGTCCTGT TAAATCCACT CAATGTGCAG CATGCGCAGC ATTATGCTTT
ATGGTTCCAG TAGCTGCAGA ACCGCAGCTT GTTTTGCCTC TTATTGTTAT TTTTATTGCG
TCGTTTATTA TGGTGCGCTC TCATCGTATT ATGTTCGCGC TTATGCCTAT ACCATCGATA
ATTGTTTTGC TTCCTACAAT AGGAAGTGCT ATTAGATATG GCGAATCTGG AATGTGGCGT
CAATTGTTCT CTAGTATGGC TTTGCCATTG AGAAGTGTGC AAGGTGCTCC ACGCGTAAGC
GATTACGCTG ATGTTTTGTT GCACGCTTTT AATATGGCTT CTCCTAATGT TGAAATTAAT
ATGCCATTGA TGAGCTTAAG AACAATAATA ATGGTAATTT TTGCAATTCT AGCTGTTGTT
ATGGCTGTTA CGTCATTAAC TTTGCCTTTT GCTTTGCGAG TTTCTCGAAT GATGTGGGTT
GTGATTATTT CCGGAATGCT GTTATCTCTT ATTGCCGCTC GTGTTGTAGT TGCATCCGAT
ATTTCAGGAC CTGTTGCTGC AAGCGTTTTG CCTGGAGTCG CATTATCTAC TGTCGGCATT
TTATCTTGTA TGTGCATGGT TGCCGGTCAA GCTGTTCGAC GCTTTGAGCC ACTACGTACT
TCGAAGGAAT CTGAGTCTCA AATTTTTGAT AACTATAAAA CTCGTGCAAG TAGACGTGCT
GCAATGCGTC GTTCTGCGGC ACAATTGTTG CAGCGCATAA TTCGCATAGC ACGCGCTGTT
CTTGCAAGTA GCATGTTGAC TATGGCGGTT CTTTTGGGTC TTTTTGCTGT ATTGAGCGGA
CCTGCTACAT CTATTTGCGC AAATAACAAT GAGCTCCCTA TGGTTGTTTC TGATTATTTG
CGAAAAGACG ATACTCGGCG AATACTTGCT TTAAGAGCTC AAAGTAGCCA TGATTTGTCA
ATCTCTATTA TGCGAACATC TAAGGGAGAT GCAATAGACG AATCTCCAGC ACTTCGTGTT
AGACAAGTAA TGTTTGGTGA TTCATCAAGC AATAAAGCAA TATATCGTGC CTCAGCACAA
TTGTTATCTC ATGCAGATAA TGGCGCAATT TCAACGTTAA AGCAACTTGG AATTGGCGGT
ATTTATATTG TTAATAGTTC AGAAAATAAG CAGGTTTCCC ATAAAACTTC TATGTCAATA
CAACAATTGT TACATCCTTC TGTGCAAACA GTGAGTAATG TTAACAAAGA AGCTACTGAA
CAATTAATTG CACACGTTAA CGCTTCTGAC GGTACACAAT TGGTTGTTTC ATCACCGCAA
GGAACTTATT GCAGATTTGA TGGTGTGCCT GATTCTAAGT CGTTGTCTTC TACATCTCCG
TATTATCGAT CTAGGCCTCT TGCGTGGAGA GTTCCTTGGA TTATTGTTTC TTCTATGGTA
TTACTGCTGT ACTGTATTGT TGCCGTGCCT CGATTTGGCG GACATGCAAT GATAGAACGT
TCAGATGACA GGCATGAGGA GGAATTAGAT GAACTGGCAT AA
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| Protein sequence | MDSITAHNLT FEDEVLQVLS SAKDAHPHDV DSSIMAMMCV ERDTRFYADT LHAVLSQSIL
PGTLVIVDCA SRVKQTMQTN LQIKINSSKL AGAINTRKSL LQNANNIDSN NAIDSDSKYR
PNTNRVNNTR VNNSENKSVH IIIIPISYAH SFGDAIEKSL RKILPCAGVS ALWLLHDDSR
PADFHCLEYL RETWRNTPTA SVLGAKQVDW QGNILHNVGM YAWRHGVHTL TVDGEPDQEQ
YDGRGDVYAV SLAGALVTLT AWQTLRGTQP WMTTFGESRD FCRRVCLSGG RVVVVPSARI
AHRRARLEGI RTRNGDARNH NNSGSKYGVA ASLVAKQRYK YTDISIFLWP LIWILSLPAC
FVGALHSLFA KHPYIAWIRL LLPWLAIMQL PRAVFARRRV ARNTRVPLKR LVPLIADRHQ
VARWRDRSSA FQAQQHFVLL SPLAKRHLHI RVLRRWSAVI LASLLLFAVI LNLYGSPWRE
ILSGASWNAQ QWLPTGADFN QLWNSAIGAW VPDDGFGPAI PPAPWLSIWA IASIVVGANP
LLAVTLMFFL AAPAMCLSFW ALAGVFTRSD TVRVCAGICW TMIAIAFGLF ARGDLPMLMT
MAFLPAAFAF AFHAVGMYVT EDPVRPVKST QCAACAALCF MVPVAAEPQL VLPLIVIFIA
SFIMVRSHRI MFALMPIPSI IVLLPTIGSA IRYGESGMWR QLFSSMALPL RSVQGAPRVS
DYADVLLHAF NMASPNVEIN MPLMSLRTII MVIFAILAVV MAVTSLTLPF ALRVSRMMWV
VIISGMLLSL IAARVVVASD ISGPVAASVL PGVALSTVGI LSCMCMVAGQ AVRRFEPLRT
SKESESQIFD NYKTRASRRA AMRRSAAQLL QRIIRIARAV LASSMLTMAV LLGLFAVLSG
PATSICANNN ELPMVVSDYL RKDDTRRILA LRAQSSHDLS ISIMRTSKGD AIDESPALRV
RQVMFGDSSS NKAIYRASAQ LLSHADNGAI STLKQLGIGG IYIVNSSENK QVSHKTSMSI
QQLLHPSVQT VSNVNKEATE QLIAHVNASD GTQLVVSSPQ GTYCRFDGVP DSKSLSSTSP
YYRSRPLAWR VPWIIVSSMV LLLYCIVAVP RFGGHAMIER SDDRHEEELD ELA
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