| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0578 |
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| Symbol | |
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| ID | 8709736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 624779 |
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| End bp | 626182 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482687 |
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| Product | transporter, major facilitator family protein |
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| Protein accession | YP_003373814 |
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| Protein GI | 283783060 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.199394 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGA TTGCAAAATT TAGCGCGGTA GACCCATACG AGGATCCAAA AACCCGCGAC
AAAGTGGCGA TTTACTCGCT AATTTTACTT CTTATAACCT TTATTCTTGG AACATTGTGT
TTGCAAGGAT TTAATCTGGT ATTCGATCAG ATTGGTAAAG CTGTTGGTGC TCCTAATCAA
GCTTCTCTTA TTACGAGTTT GCCAATTATT GTTTTAGGCA TTGTGTGCTT TATTTACGGT
TCTTTGGGTG ACTTTGTGTC GCTTCGTAGA CTCATAACAA TCGGACTTGT AACACTGTTT
GTTGGATCCT TGTTCGGTTT TATTGCAAAC TTCTTCTTCA CTCCAAACTT GTGGACTGTT
ATTATTGCGC GTATTTTACA AACCGCTGGC GAGCAGGTAG CAGGTTCTTC CTTCCTTGTT
ATTGCAACTA AGTATTTGCG CAACGATCTT AAGGTAATTT TCTTTGGACT CTTTACTGCA
GCTTATCAGC TTTCTGCTTC TATTGGCGTT TTTGCTGCTG GTGCTCTTAG CTCTATTGCT
TGGCAGTATT TGTTCTTGAT TCCTGCAATT ACTATTCTGT TCTTGCCAGT TCTTGTTAAG
TGCTTGCCTA CAAAGAACGG TATTGGTGGG AAGATAGATA AGCTTGGCTT TACAGTGTTT
GGTATTGCTG TTGCATTGCT GACTTTGTTC TTCTCGTACA AGGCATGGGG ATTGTTGCTT
GGATCCATCG TGCTGTTTGT TGTGTTTGCT GGCTATATTA TGAAGGCAAA GAACCCGTTT
GTAACTCCTG CATTCTTTAA GAATAAGCGT TGGCTTTCGG GCATTGTCTT AATATTCATC
TTCTACTTTA CTAACTATTG CATGCCTCCA ATTTACAATG TGATTGGCGG TGCTTTGTAT
CATATGAGCA CTGAGGCAGT TTCTTCCTAC CTTGTATGGG CATTCGTTGT AGCAGCAGTG
TTTGGAACAT GCTCTGGGAC AATTATCGGT TTTATTGGAC GTAAAGCTGG CATTATTATA
GCTGCTGTTC TTATGATTCT TGGATGGGTT GGAGCTGCTG TATTCATCAA TTGCGGATTC
CTTGTTCTAA CTTTGTGCGC ATGCGTTTAC TACGCTGGTT GCGGACTTAT GTATTCGCCA
ATCGTTTCAA CGGTTCTTAG CGCATTGCCT GTTGAAGAAT CGGGTCGTGG ATGCGGTATG
AATGATTTAG TTATGAATGT TACAGCATCA ATCGGTATTT CCATTTTCAG CGGTTTCTTT
GGCGGAAACT TGCTAAAAGG ATTCTCTTTT GCTGGAATCC AAGGCTTAGG TGCAGGTTAT
TCTAACTTGC TTATGATGGG CGCTATTGTA GCCTTTATTG GCTTAGTAGT TTACATTGCT
CGTAGTCTTA TGGTTAAAGA GTAA
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| Protein sequence | MTEIAKFSAV DPYEDPKTRD KVAIYSLILL LITFILGTLC LQGFNLVFDQ IGKAVGAPNQ
ASLITSLPII VLGIVCFIYG SLGDFVSLRR LITIGLVTLF VGSLFGFIAN FFFTPNLWTV
IIARILQTAG EQVAGSSFLV IATKYLRNDL KVIFFGLFTA AYQLSASIGV FAAGALSSIA
WQYLFLIPAI TILFLPVLVK CLPTKNGIGG KIDKLGFTVF GIAVALLTLF FSYKAWGLLL
GSIVLFVVFA GYIMKAKNPF VTPAFFKNKR WLSGIVLIFI FYFTNYCMPP IYNVIGGALY
HMSTEAVSSY LVWAFVVAAV FGTCSGTIIG FIGRKAGIII AAVLMILGWV GAAVFINCGF
LVLTLCACVY YAGCGLMYSP IVSTVLSALP VEESGRGCGM NDLVMNVTAS IGISIFSGFF
GGNLLKGFSF AGIQGLGAGY SNLLMMGAIV AFIGLVVYIA RSLMVKE
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