Gene HMPREF0424_0575 details

Gene Information

• Locus tag: HMPREF0424_0575
• Symbol: nrdR
• ID: 8709523
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 620557
• End bp: 621012
• Gene Length: 456 bp
• Protein Length: 151 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 646482684
• Product: transcriptional regulator NrdR
• Protein accession: YP_003373811
• Protein GI: 283783057
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.0494277
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCATTGTC CTTTTTGTAA GAATTCTGAT ACGAAAGTTA TAGATACTCG TATCAGTGAA 
GATGGTTACT CTATTCGCCG TAGACGTGAA TGCCAAGTTT GTGGTAATCG ATTTACTACG 
GTGGAAACAA CTCAGTTGCT TGTAATGAAG CGTTCAGGCT CTATTGAACC TTTTGATCGG 
GCAAAAGTTG TTGCCGGTGT TAGCAAAGCA TGTCAAGGAC GTCCCATTAA TGCTGAAGCG 
TTAAAGACAA TTGGTATGCG AGTAGAAGCT GATTTGCGAG CACGAGGTTT AGCGCAAGTT 
ACATCTGAAG AAGTTGGCAA AGCTATTCTT AAGCCATTGC GTGAATTAGA TGAAGTTGCA 
TATCTTCGTT TTGCAAGTGT GTACCAAAAC TTCGCAGGTC TTGAAGATTT TGAACATGCC 
ATTGAAGATT TAAAGCGCAG TAAAACAGAA AAATAA 

 

Protein sequence

MHCPFCKNSD TKVIDTRISE DGYSIRRRRE CQVCGNRFTT VETTQLLVMK RSGSIEPFDR 
AKVVAGVSKA CQGRPINAEA LKTIGMRVEA DLRARGLAQV TSEEVGKAIL KPLRELDEVA 
YLRFASVYQN FAGLEDFEHA IEDLKRSKTE K