| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0560 |
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| Symbol | |
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| ID | 8709222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 604664 |
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| End bp | 606742 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482670 |
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| Product | YhgE/Pip C-terminal domain protein |
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| Protein accession | YP_003373797 |
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| Protein GI | 283783043 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1511] Predicted membrane protein |
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| TIGRFAM ID | [TIGR03057] X-X-X-Leu-X-X-Gly heptad repeats
[TIGR03061] YhgE/Pip N-terminal domain
[TIGR03062] YhgE/Pip C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000430326 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGTTA GTACTATTGC TCTTGCATTT CGTGAGATTA ACAATACGAT GAAAGGAAAA
GCTCGAAAGC TTGTTATTGG AACCGTAGCT TTGATTCCAC TTTTATACGG ATCGCTTTAC
TTATGGGCAT TTACAAATCC TTATAAGACT TTGGATACTG TGCCTGTGGC TGTTGTTGTT
GAAGACAATG GCGCTATGAT TAACGGCAAA ATGCGAAACA TTGGAAACGA AATCAAAACT
CGTTTAAAGA ATCAAAAAGA CGGTAGTGAA GGTTTCCAAT GGAATTTTGT AAATAGTGCT
GAAGCAAATA AGGGCCTTAA AAATGGCAAC TATTTTATGG TAGCAACTAT TCCAGCTTCC
TTCAGTAAGT GCATTGCTTC CGCGCAATAC GATACTCCAA CTAAAGCAAA ACTTCACGTA
AAGTACGATC AAGCAAGCAA TATGCTGGCT TCACAAATTG GTAAAACTGC TTTCCGCACT
ATGCGTACTG AGATTAGCGA GGCGATTGCT CAAGAGTATT GGGAGCACAT GTTTGCGAAA
GTTAATTCAG CTTCCGATTC TCTTGGTGCT GCTGCAAACG GTGCTGGAGC ATTGCATGAA
GGTTCAAAGT CTTTGCAAGG CGGAATAAAT AAGCTTGCAG ATGGGTCGAA TAAACTTTCG
CAATCTTTGC AAAAACTTCA AGGCGGATTA GGGGAGCTTC AAAAAGGCGC GAATACGCTA
ACTGAAGCCA ATGCTCGCAG CAAAGAAGGA GCTCAATATC TTGCACAAAA AACGCAAGAT
TTAGCAAACG GAGCCCAACA GTTAAGCGAA GGAACGCAAA GGCTATCGGC AGCGACAAGC
GAATTCTATG AAGGAGCTCA AAAGCTTGCA GCTTCAAGCA ACGAATTAGA AGAACATGTT
AAAGCTGGAA ACGCTGAAAC AAAAGCACAA ATTACTGGTC TTCTTATGCA AGCGCAAAAC
CCAGCAGTAA CAAAGGAAGA CGTGCTTGCT AATTTGCAAA GATTGGCAGA AGGATTAGGT
GAAAATTCTA ATCTTCTAGA AACAAATCTT TCTGCTTTAA GCGCTGGAGC AGACAAGCTT
TCTGCAGGGA GCTTGCAAAT AAAGGGCGGT GCTGAGGCTC TTATGCAAGG CATGGAGAAA
GTTAATGTTG GTTCAGATAA GTTAGTTGCT GGCACAAATA AGCTTGCTGA CGGTTTGGCT
CAAGTAAGTA ACGGTAGCGA GAAACTAAAT AGTGGCGTGA ATGAAGCTGC ACAAGGTTCT
GCGAAAATAG TGAACGGTTC TGATCAGCTT AATTCCGGCG CTAAGAAGCT ATCTGATAAC
ACTCCAAAGC TTGTTGATGG TACTAAGAAA TTGCATGACG GGCTTAAAGA TGCTCAAAAG
TCTGGAAAAG TAAACGGTAT TGTTCAAAAA AGTAAGATGA TGAGCGCACC AGTTTCCTTG
GAGGAGCACG AGTATTCGCA CGTTGAAAAC TATGGAACTG GTTTTGCTCC TTACTTTATT
TCTATCGCCC TTTGGGTTGG TGCTCTTATG ACAACATTCG TTTTGAGAGT TATGGATAGG
CGAGCGATAC TAAACGGCAT GAATCCGCTT AAAAGCGCGC TTATTAGCTT GACGCCGTTT
GTGATTATGG GCGTTTCGCA AGCGATTATT CTTATGGGCG TTGTTCAAGG AGCGTTGAAG
TTCCAAATCG ATAATGTTGG TGCATTCTAC GCGCTGGGGA TTCTAGCGTC AATAGTCTTT
ATGGCTATAA TGCAAATGAT TATGGTGGTG TTCCGCATGC CAGGGCGAAT AGTTGCGATT
GTGCTACTTA TGTTGCAAAT CACAAGCTCT GCAGGAACGT TCCCAGTACA AATGACGCCG
GCATTCTTTA GAGCTGTTCA CCCATATTTG CCAATGACGT ACTCGATTAT GGGGTTGCGT
CAAGCAATGT CTGGAAAGAA CAGTGGTGAA ATAGTTTCAG GCATTGGAAT GCTTGTGCTT
TTCGGCGTTA TTGCGATTGC TATAACAAGT ATTGCCTTCC GCATGAAGCG TACTGTAAAA
ATGTTTGATT TGCATCCTGT AATAACGCTT GATGCATAA
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| Protein sequence | MHVSTIALAF REINNTMKGK ARKLVIGTVA LIPLLYGSLY LWAFTNPYKT LDTVPVAVVV
EDNGAMINGK MRNIGNEIKT RLKNQKDGSE GFQWNFVNSA EANKGLKNGN YFMVATIPAS
FSKCIASAQY DTPTKAKLHV KYDQASNMLA SQIGKTAFRT MRTEISEAIA QEYWEHMFAK
VNSASDSLGA AANGAGALHE GSKSLQGGIN KLADGSNKLS QSLQKLQGGL GELQKGANTL
TEANARSKEG AQYLAQKTQD LANGAQQLSE GTQRLSAATS EFYEGAQKLA ASSNELEEHV
KAGNAETKAQ ITGLLMQAQN PAVTKEDVLA NLQRLAEGLG ENSNLLETNL SALSAGADKL
SAGSLQIKGG AEALMQGMEK VNVGSDKLVA GTNKLADGLA QVSNGSEKLN SGVNEAAQGS
AKIVNGSDQL NSGAKKLSDN TPKLVDGTKK LHDGLKDAQK SGKVNGIVQK SKMMSAPVSL
EEHEYSHVEN YGTGFAPYFI SIALWVGALM TTFVLRVMDR RAILNGMNPL KSALISLTPF
VIMGVSQAII LMGVVQGALK FQIDNVGAFY ALGILASIVF MAIMQMIMVV FRMPGRIVAI
VLLMLQITSS AGTFPVQMTP AFFRAVHPYL PMTYSIMGLR QAMSGKNSGE IVSGIGMLVL
FGVIAIAITS IAFRMKRTVK MFDLHPVITL DA
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