Gene HMPREF0424_0555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0555 
Symbol 
ID8708779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp599581 
End bp600159 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content38% 
IMG OID646482665 
ProductLemA family protein 
Protein accessionYP_003373792 
Protein GI283783038 
COG category[S] Function unknown 
COG ID[COG1704] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones4 
Fosmid unclonability p-value0.00000372284 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGAGACA TTATGGGTGA CGTTATGGAT AAGAACACTG TGCTAATTTG TGTTGCAATA 
GTGCTTGTAG TGCTTATTGT CTGGTTTATT GGCATGTTAA ATAGGCTAAG AAAATATAGG 
GTGATTATAG AAGAGTCGCG GAAAAACGTT GATATTGCGC TCGCTAAAAG ATATGATACG 
ATTTGCCAAA TGCTTAAAGT TGCGCAGTCG TTTGCAAAGT ACGAAAAAAC AACCTTAGTG 
GATTTAGTGA GTTTAAGAGA AGGATTGGGA TCAGCGGATT CTAGTTCGGT AATCAAAAAT 
CAGAATCATG CAATAGGGAA GATTTTTGCT TTGGCGGAAG CTTATCCGGA ATTAAAGTCT 
TCTGAGCAGT TTTTGAACTT GCAAGAGGAA ATAAACGATG AAAATGAGCA GCTGGCGGCG 
GCAAAAAGAA TCGTAAATAG TAACATTAGT ACTCTTAATC AAAATATCGT TACCTTCCCA 
GTGTCGCTTA TTGCAAGCTT AAGCGGAATA AAGCAGATGG CTTTTCTTGA CGAAGATAAT 
CTAATCAATA AGAAGAATAT TGATAGCATA CTGAGCTAG
 
Protein sequence
MGDIMGDVMD KNTVLICVAI VLVVLIVWFI GMLNRLRKYR VIIEESRKNV DIALAKRYDT 
ICQMLKVAQS FAKYEKTTLV DLVSLREGLG SADSSSVIKN QNHAIGKIFA LAEAYPELKS 
SEQFLNLQEE INDENEQLAA AKRIVNSNIS TLNQNIVTFP VSLIASLSGI KQMAFLDEDN 
LINKKNIDSI LS