Gene HMPREF0424_0528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0528 
Symbol 
ID8709941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp566505 
End bp566996 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content40% 
IMG OID646482642 
Producthypothetical protein 
Protein accessionYP_003373769 
Protein GI283783015 
COG category[L] Replication, recombination and repair 
COG ID[COG1961] Site-specific recombinases, DNA invertase Pin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.000114476 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAGGTTG GTTCATCAAG ATCTGAATTT AATCGAATGA TTGATGAGTG TGAGAAAGGT 
AATCTTGATA TTATTCTTAC TAAAAGTGTG AGTCGTTTTG GTCGTGATAC GAAAGAAGGC 
TTAGAGGCTA TTAGAAAGAT TCGATCATGT GGTACAAGGA TTATCTTTGA GACCGATAAG 
ATTGATACGG AAACTGTCGA TGATGAACTT TTAATCAGTG TGGTTCAAGC GTGCTGTCAG 
GCTGAAAATG ATTGGCGTAG CGAGAATATT GTTTGGGGAT TAAGGCGTAG AGCAGAAGAT 
GGCACGTCGG GTCTTTATAG TAGGGCTTGT TATGGTTATA AGAAAGATAA GCATGGCATG 
CTGAATGCAG GCATTATTTC TAAAGAGAAG TTTGAAGCCG TTGAGCTTGA GATGGCGGTT 
CGTAGTAATG TGGAAGTTGG AGAGGACGGA ACGGTCAAAC GCAAGTCTAA GAAATATAGT 
TCGAAAAGAT GA
 
Protein sequence
MKVGSSRSEF NRMIDECEKG NLDIILTKSV SRFGRDTKEG LEAIRKIRSC GTRIIFETDK 
IDTETVDDEL LISVVQACCQ AENDWRSENI VWGLRRRAED GTSGLYSRAC YGYKKDKHGM 
LNAGIISKEK FEAVELEMAV RSNVEVGEDG TVKRKSKKYS SKR