| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0525 |
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| Symbol | |
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| ID | 8709448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 564254 |
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| End bp | 565192 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482639 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_003373766 |
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| Protein GI | 283783012 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000127264 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATACGAA ATAATAATCA GGTTGAAACT ATGCAAAATA AAATTATTAA AAATAGTAAG
TACGCTGAAT TGCATCAATA TAATCAATAT TCTCAGTATG GTCACGTGAG CGTGTTATCT
AGTATACGAA CTGGCGCAAG AGTGAGTATA CAGAGTATAC CTAGCTTAAA TAGTTGGAAT
ACTGCTGTTA TTCGTATGAT TATTGAGCCT CTTTTATCCA CGTTCTTATA CGTTTTTCTA
GCTGGGGCTG TAAGTGGAGG ATTCAATGGA GCAGCTAGTG CTGCAACTAG CGCTGGTTTT
AATCATAGTT TGATTGCTTC AACTCTTGCT GCTGTGATGT GTGCATGTTC TATTTCCACA
AGTATGACTG TGTCAGAAGC ACTAGCATGG GATCGTTTTG AAGGAACAAC ACCATTCGTG
CTTACAAGCG CGAAAGTTGC ATTACCATTA TGGTTCGGCC GTATTGTTGC GCTCGTGACT
ATTTCTTTAG TGAGTGATGC TGTGACTTTG TTTATAACAA TGCTTGTAGT AAGCCCGAGT
GCTTTCTGGA TGATTAATAT GAGTGCGTTG ATGCTGTTGT TCCTTATTGT TCCTGTTGCT
TCTACGGGAT TTGGTATTGC TGTAGCTGCT ATAAGCATGA TGATGAATGA TGTTTATACT
ATTTCTAACG CGCTTAGTGC AATACTTCCT ATTGTTTGTG GTGTGATTGC TCCAATTAGC
GTATTTCCTA AGATGATGCA ATACGTGTTA TATGCGATTC CAGTAACTCA TGTTACTCAA
GCATCTCGTA GTATAGTTGA TGGTTCTGTA AATGTTGGCG TATCGCTACT TGTGATTCTT
GTTGTTGGCA TGTTATGGGC AATTGTTGGC GTGATTATAT GGAATGTTGG TGTGGCGGTT
CAACAGCGTA AAGGTACTTT AACAAATATA GGGTTTTAG
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| Protein sequence | MIRNNNQVET MQNKIIKNSK YAELHQYNQY SQYGHVSVLS SIRTGARVSI QSIPSLNSWN
TAVIRMIIEP LLSTFLYVFL AGAVSGGFNG AASAATSAGF NHSLIASTLA AVMCACSIST
SMTVSEALAW DRFEGTTPFV LTSAKVALPL WFGRIVALVT ISLVSDAVTL FITMLVVSPS
AFWMINMSAL MLLFLIVPVA STGFGIAVAA ISMMMNDVYT ISNALSAILP IVCGVIAPIS
VFPKMMQYVL YAIPVTHVTQ ASRSIVDGSV NVGVSLLVIL VVGMLWAIVG VIIWNVGVAV
QQRKGTLTNI GF
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